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update_protocol_title

Modify the title of an existing protocol on protocols.io by specifying its unique ID and providing a new plain text title.

Instructions

Update the title of an existing protocol by its protocol ID.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
protocol_idYesUnique identifier for the protocol
titleYesNew title for the protocol (plain text only)

Implementation Reference

  • The core handler function for the 'update_protocol_title' tool, decorated with @mcp.tool() for registration. It performs a PUT request to update the protocol title and fetches the updated protocol.
    @mcp.tool() async def update_protocol_title( protocol_id: Annotated[int, Field(description="Unique identifier for the protocol")], title: Annotated[str, Field(description="New title for the protocol (plain text only)")] ) -> Protocol | ErrorMessage: """ Update the title of an existing protocol by its protocol ID. """ data = {"title": title} response_update_protocol = await helpers.access_protocols_io_resource("PUT", f"/v4/protocols/{protocol_id}", data) if response_update_protocol["status_code"] != 0: return ErrorMessage.from_string(response_update_protocol["status_text"]) response_get_protocol = await helpers.access_protocols_io_resource("GET", f"/v4/protocols/{protocol_id}") if response_get_protocol["status_code"] != 0: return ErrorMessage.from_string(response_get_protocol["status_text"]) protocol = await Protocol.from_protocol_id(response_get_protocol["payload"]["id"]) return protocol
  • Imports the tools module, which triggers the loading and registration of all MCP tools via their @mcp.tool() decorators.
    importlib.import_module('protocols_io_mcp.tools')
  • Helper class method Protocol.from_protocol_id used by the tool to construct the Protocol object from API response.
    async def from_protocol_id(cls, protocol_id: int) -> "Protocol": response = await helpers.access_protocols_io_resource("GET", f"/v4/protocols/{protocol_id}?content_format=markdown") protocol = response["payload"] return cls( id=protocol_id, title=protocol["title"], description=protocol.get("description") or "", doi=protocol.get("doi") or None, url=protocol.get("url"), created_on=datetime.fromtimestamp(protocol.get("created_on"), tz=timezone.utc), published_on=datetime.fromtimestamp(protocol.get("published_on"), tz=timezone.utc) if protocol.get("published_on") else None )
  • Utility function to make authenticated API requests to protocols.io, heavily used in the tool implementation.
    async def access_protocols_io_resource(method: Literal["GET", "POST", "PUT", "DELETE"], path: str, data: dict = None) -> dict[str, Any]: """Access protocols.io API with specified method and path.""" headers = { "Authorization": f"Bearer {PROTOCOLS_IO_CLIENT_ACCESS_TOKEN}" } async with httpx.AsyncClient(timeout=30.0) as client: response = await client.request(method, f"{PROTOCOLS_IO_API_URL}{path}", json=data, headers=headers) return response.json()
  • Pydantic model for error output from the tool.
    class ErrorMessage(BaseModel): error_message: Annotated[str, Field(description="Error message describing the issue encountered")] @classmethod def from_string(cls, message: str) -> "ErrorMessage": return cls(error_message=message)

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