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search_models

Find GO-CAM biological models by filtering criteria including title, state, contributor, research group, publication, or gene product to retrieve relevant model metadata.

Instructions

Search for GO-CAM models based on various criteria.

Allows searching models by title, state, contributor, group, publication, or gene product. Returns a list of matching models with their metadata.

Args: title: Search for models containing this text in their title state: Filter by model state (production, development, internal_test) contributor: Filter by contributor ORCID (e.g., 'https://orcid.org/0000-0002-6601-2165') group: Filter by group/provider (e.g., 'http://www.wormbase.org') pmid: Filter by PubMed ID (e.g., 'PMID:12345678') gene_product: Filter by gene product (e.g., 'UniProtKB:Q9BRQ8', 'MGI:MGI:97490') limit: Maximum number of results to return (default: 50) offset: Offset for pagination (default: 0)

Returns: Dictionary containing search results with model metadata

Examples: # Search for all production models results = search_models(state="production")

# Find models containing "Wnt signaling" in title results = search_models(title="Wnt signaling") # Find models for a specific gene product results = search_models(gene_product="UniProtKB:P38398") # Find models from a specific paper results = search_models(pmid="PMID:30194302") # Find models by a specific contributor results = search_models( contributor="https://orcid.org/0000-0002-6601-2165" ) # Combine filters results = search_models( state="production", title="kinase", limit=10 ) # Pagination example page1 = search_models(limit=50, offset=0) page2 = search_models(limit=50, offset=50) # Find models from specific research group results = search_models(group="http://www.wormbase.org") # Search for development models with specific gene results = search_models( state="development", gene_product="MGI:MGI:97490" )

Notes: - Results include model ID, title, state, contributors, and dates - Use pagination (offset/limit) for large result sets - Filters can be combined for more specific searches - Gene products can be from various databases (UniProt, MGI, RGD, etc.)

Input Schema

NameRequiredDescriptionDefault
titleNo
stateNo
contributorNo
groupNo
pmidNo
gene_productNo
limitNo
offsetNo

Input Schema (JSON Schema)

{ "properties": { "contributor": { "anyOf": [ { "type": "string" }, { "type": "null" } ], "default": null }, "gene_product": { "anyOf": [ { "type": "string" }, { "type": "null" } ], "default": null }, "group": { "anyOf": [ { "type": "string" }, { "type": "null" } ], "default": null }, "limit": { "default": 50, "type": "integer" }, "offset": { "default": 0, "type": "integer" }, "pmid": { "anyOf": [ { "type": "string" }, { "type": "null" } ], "default": null }, "state": { "anyOf": [ { "type": "string" }, { "type": "null" } ], "default": null }, "title": { "anyOf": [ { "type": "string" }, { "type": "null" } ], "default": null } }, "type": "object" }

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