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Noctua MCP Server

Official
by geneontology
cli.py1.38 kB
"""Command line interface for noctua-mcp.""" from __future__ import annotations import sys import typer from typing_extensions import Annotated from noctua_mcp.mcp_server import mcp app = typer.Typer() @app.command() def serve( verbose: Annotated[bool, typer.Option("--verbose", "-v")] = False, ): """ Start the Noctua MCP server. The server communicates via stdio and exposes tools for GO-CAM model editing. Environment variables: - BARISTA_TOKEN: token for privileged Barista calls (required for mutations) - BARISTA_BASE: Barista base URL (default: http://barista-dev.berkeleybop.org) - BARISTA_NAMESPACE: Minerva namespace (default: minerva_public_dev) - BARISTA_PROVIDED_BY: provided-by agent (default: http://geneontology.org) """ if verbose: typer.echo("Starting Noctua MCP server...", err=True) # Run the MCP server mcp.run() @app.command() def version(): """Print the version.""" try: from noctua_mcp import __version__ typer.echo(f"noctua-mcp version: {__version__}") except ImportError: typer.echo("Version information not available") def main() -> None: """Main entry point.""" # For backward compatibility, if no args provided, run serve if len(sys.argv) == 1: serve() else: app() if __name__ == "__main__": main()

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