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Noctua MCP Server

Official
by geneontology
action.yml3.83 kB
name: "Claude Issue summarize Action" description: "Automatically Summarize GitHub issues using Claude Code" inputs: timeout_minutes: description: "Timeout in minutes for execution" required: false default: "5" anthropic_api_key: description: "Anthropic API key" required: true cborg_api_key: description: "CBORG API key" required: true github_token: description: "GitHub token with repo and issues permissions" required: true runs: using: "composite" steps: - name: Checkout repository code uses: actions/checkout@v4 with: fetch-depth: 0 - name: Create prompt file shell: bash run: | mkdir -p /tmp/claude-prompts cat > /tmp/claude-prompts/claude-issue-summarize-prompt.txt << 'EOF' You're an Summarization assistant for GitHub issues. Your task is to analyze the issue, look up related issues, and summarize the issue. Remember that this repo is primarily a note-taking and memory device for Chris Mungall, so anything you can do to enhance and enrich that would be helpful. IMPORTANT: Don't make any PRs. You should ONLY post a response, IN THE SAME ISSUE. Issue Information: - REPO: ${{ github.repository }} - ISSUE_NUMBER: ${{ github.event.issue.number }} TASK OVERVIEW: 1. First, use your judgement to determine the course of action. - If the issue is an epic or has links to other issues, read those issues, and summarize them. Summarize their status etc. Given an overall summary. - If the issue is an idea or a vague high level description, run with the idea, do deep research, give heloful suggestions with links to relevant papers etc. - If there are links in the issue to websites, database entities, etc, then look these up. - If there are links or references to papers, then looks these up and summarize (don't guess content - if you can't access the paper, then say "I can't access the paper") - Try using artl-mcp to get paper fulltext. - If you want a more powerful AI agent to take on this one and make a PR, use this magic phrase: `@dragon-ai-agent please <INSTRUCTIONS>` 2. Next, use the GitHub tools to get context about the issue: - You have access to these github tools: - mcp__github__get_issue: Use this to retrieve the current issue's details including title, description, and existing labels - mcp__github__get_issue_comments: Use this to read any discussion or additional context provided in the comments - mcp__github__update_issue: Use this to apply labels to the issue (do not use this for commenting) - mcp__github__search_issues: Use this to find similar issues that might provide context for proper categorization and to identify potential duplicate issues - mcp__github__list_issues: Use this to understand patterns in how other issues are labeled - You can also use web searching and fetching. - It's okay to not add any information if the issue is not clear. EOF - name: Run Claude Code uses: ./.github/actions/claude-code-action with: prompt_file: /tmp/claude-prompts/claude-issue-summarize-prompt.txt allowed_tools: "Bash(gh label list),WebFetch,Fetch,LS,mcp__github__get_issue,mcp__github__get_issue_comments,mcp__github__update_issue,mcp__github__add_issue_comment,mcp__github__search_issues,mcp__github__list_issues" install_github_mcp: "true" install_artl_mcp: "true" timeout_minutes: ${{ inputs.timeout_minutes }} anthropic_api_key: ${{ inputs.anthropic_api_key }} cborg_api_key: ${{ inputs.cborg_api_key }} github_token: ${{ inputs.github_token }}

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