OneKGPd

/* * The MIT License (MIT) * * Copyright (c) 2025 Dmitry Degrave * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal * in the Software without restriction, including without limitation the rights * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell * copies of the Software, and to permit persons to whom the Software is * furnished to do so, subject to the following conditions: * * The above copyright notice and this permission notice shall be included in all * copies or substantial portions of the Software. * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE * SOFTWARE. */ package org.dnaerys.client; import org.dnaerys.cluster.grpc.Chromosome; import java.util.ArrayList; import java.util.List; public class ContigsMapping { static org.dnaerys.cluster.grpc.Chromosome contigName2GrpcChr(String contig) { switch (contig) { case "1": return (Chromosome.CHR_1); case "2": return (Chromosome.CHR_2); case "3": return (Chromosome.CHR_3); case "4": return (Chromosome.CHR_4); case "5": return (Chromosome.CHR_5); case "6": return (Chromosome.CHR_6); case "7": return (Chromosome.CHR_7); case "8": return (Chromosome.CHR_8); case "9": return (Chromosome.CHR_9); case "10": return (Chromosome.CHR_10); case "11": return (Chromosome.CHR_11); case "12": return (Chromosome.CHR_12); case "13": return (Chromosome.CHR_13); case "14": return (Chromosome.CHR_14); case "15": return (Chromosome.CHR_15); case "16": return (Chromosome.CHR_16); case "17": return (Chromosome.CHR_17); case "18": return (Chromosome.CHR_18); case "19": return (Chromosome.CHR_19); case "20": return (Chromosome.CHR_20); case "21": return (Chromosome.CHR_21); case "22": return (Chromosome.CHR_22); case "X": return (Chromosome.CHR_X); case "Y": return (Chromosome.CHR_Y); case "MT": return (Chromosome.CHR_MT); default: return (Chromosome.UNRECOGNIZED); } } static List<Chromosome> contigName2GrpcChr(String[] contigs) { ArrayList<Chromosome> res = new ArrayList<>(contigs.length); for (String chr : contigs) { res.add(contigName2GrpcChr(chr)); } return res; } }