package org.dnaerys.testdata;
/**
* Test constants for Dnaerys MCP Server tests.
*
* Default trio: HG00405 (daughter), HG00403 & HG00404 (parents)
* All sample IDs are pre-configured - no additional input required.
*/
public final class TestConstants {
private TestConstants() {}
// ========================================
// DATASET CONSTANTS (verified values)
// ========================================
public static final long EXPECTED_TOTAL_SAMPLES = 3202L;
public static final long MIN_EXPECTED_VARIANTS = 80_000_000L;
public static final int MAX_RETURNED_ITEMS = 50;
// ========================================
// GENOMIC REGIONS (GRCh38 coordinates)
// ========================================
// BRCA1 - Breast cancer gene
public static final String CHR_BRCA1 = "17";
public static final int BRCA1_START = 43044295;
public static final int BRCA1_END = 43170245;
// TP53 - Tumor suppressor gene
public static final String CHR_TP53 = "17";
public static final int TP53_START = 7661779;
public static final int TP53_END = 7687546;
// CFTR - Cystic fibrosis gene
public static final String CHR_CFTR = "7";
public static final int CFTR_START = 117287120;
public static final int CFTR_END = 117715971;
// HBB - Hemoglobin beta gene (short region)
public static final String CHR_HBB = "11";
public static final int HBB_START = 5225464;
public static final int HBB_END = 5229395;
// Sparse region (few/no variants expected)
public static final String CHR_SPARSE = "22";
public static final int SPARSE_START = 50000000;
public static final int SPARSE_END = 50001000;
// Dense region (many variants expected)
public static final String CHR_DENSE = "1";
public static final int DENSE_START = 1000000;
public static final int DENSE_END = 1100000;
// ========================================
// SAMPLE IDs - Default trio: HG00405 (daughter), HG00403 & HG00404 (parents)
// ========================================
public static final String SAMPLE_FEMALE = "HG00405"; // Daughter
public static final String SAMPLE_MALE = "HG00403"; // Parent 1
public static final String SAMPLE_GENERAL = "HG00404"; // Parent 2
// ========================================
// TRIO IDs - Using the same family for all inheritance patterns
// ========================================
// De Novo trio (variants in proband absent in both parents)
public static final String TRIO_DN_PARENT1 = "HG00403";
public static final String TRIO_DN_PARENT2 = "HG00404";
public static final String TRIO_DN_PROBAND = "HG00405";
// Heterozygous Dominant trio (affected parent, unaffected parent, affected proband)
public static final String TRIO_HD_AFFECTED = "HG00403";
public static final String TRIO_HD_UNAFFECTED = "HG00404";
public static final String TRIO_HD_PROBAND = "HG00405";
// Homozygous Recessive trio (carrier parents, affected proband)
public static final String TRIO_HR_CARRIER1 = "HG00403";
public static final String TRIO_HR_CARRIER2 = "HG00404";
public static final String TRIO_HR_AFFECTED = "HG00405";
// ========================================
// KINSHIP PAIRS
// ========================================
public static final String KINSHIP_PARENT = "HG00403";
public static final String KINSHIP_CHILD = "HG00405";
public static final String KINSHIP_UNRELATED1 = "HG00406";
public static final String KINSHIP_UNRELATED2 = "HG00406";
}
