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<!doctype html> <html lang="en"> <head> <title>Code coverage report for src/config/index.ts</title> <meta charset="utf-8" /> <link rel="stylesheet" href="../../prettify.css" /> <link rel="stylesheet" href="../../base.css" /> <link rel="shortcut icon" type="image/x-icon" href="../../favicon.png" /> <meta name="viewport" content="width=device-width, initial-scale=1" /> <style type='text/css'> .coverage-summary .sorter { background-image: url(../../sort-arrow-sprite.png); } </style> </head> <body> <div class='wrapper'> <div class='pad1'> <h1><a href="../../index.html">All files</a> / <a href="index.html">src/config</a> index.ts</h1> <div class='clearfix'> <div class='fl pad1y space-right2'> 98.25% Statements 338/344 </div> <div class='fl pad1y space-right2'> 81.57% Branches 31/38 </div> <div class='fl pad1y space-right2'> 100% Functions 2/2 </div> <div class='fl pad1y space-right2'> 98.25% Lines 338/344 </div> </div> Press n or j to go to the next uncovered block, b, p or k for the previous block. <template id="filterTemplate"> <div class="quiet"> Filter: <input type="search" id="fileSearch"> </div> </template> </div> <div class='status-line high'></div> <pre><table class="coverage"> <tr><td class="line-count quiet"><a name='L1'></a><a href='#L1'>1</a> <a name='L2'></a><a href='#L2'>2</a> <a name='L3'></a><a href='#L3'>3</a> <a name='L4'></a><a href='#L4'>4</a> <a name='L5'></a><a href='#L5'>5</a> <a name='L6'></a><a href='#L6'>6</a> <a name='L7'></a><a href='#L7'>7</a> <a name='L8'></a><a href='#L8'>8</a> <a name='L9'></a><a href='#L9'>9</a> <a name='L10'></a><a href='#L10'>10</a> <a name='L11'></a><a href='#L11'>11</a> <a name='L12'></a><a href='#L12'>12</a> <a name='L13'></a><a href='#L13'>13</a> <a name='L14'></a><a href='#L14'>14</a> <a name='L15'></a><a href='#L15'>15</a> <a name='L16'></a><a href='#L16'>16</a> <a name='L17'></a><a href='#L17'>17</a> <a name='L18'></a><a href='#L18'>18</a> <a name='L19'></a><a href='#L19'>19</a> <a name='L20'></a><a 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89x 89x 89x 89x 89x 89x 89x 89x   89x 1x 1x 1x 1x 1x 1x 1x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x   89x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 89x 89x 89x 89x 89x 89x 89x 89x 89x   89x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x   89x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x     1x 89x   89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 88x 89x 89x 1x 1x 1x 1x 1x 88x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x 1x   1x 1x 1x 1x 1x 1x 1x 1x 1x   1x 88x   89x 89x 89x 89x     89x 89x 89x 89x 89x 89x     89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x 89x   89x   89x   2x 1x 1x 1x 1x 1x   2x 2x 2x 2x 2x 2x 2x 2x   87x 87x   1x                </td><td class="text"><pre class="prettyprint lang-js">/** * @fileoverview Loads, validates, and exports application configuration. * This module centralizes configuration management, sourcing values from * environment variables. It uses Zod for schema validation to ensure type safety * and correctness of configuration parameters, and is designed to be * environment-agnostic (e.g., Node.js, Cloudflare Workers). * * @module src/config/index */ import dotenv from 'dotenv'; import { z } from 'zod';   import packageJson from '../../package.json' with { type: 'json' }; import { JsonRpcErrorCode, McpError } from '../types-global/errors.js';   type PackageManifest = { name?: string; version?: string; description?: string; };   const packageManifest = packageJson as PackageManifest; const hasFileSystemAccess = typeof process !== 'undefined' && typeof process.versions === 'object' && process.versions !== null && typeof process.versions.node === 'string';   // Suppress dotenv's noisy initial log message as suggested by its output. dotenv.config({ quiet: true });   // --- Helper Functions --- const emptyStringAsUndefined = (val: unknown) => { if (typeof val === 'string' && val.trim() === '') { return undefined; } return val; };   // --- Schema Definition --- const ConfigSchema = z.object({ // Package information sourced from environment variables pkg: z.object({ name: z.string(), version: z.string(), description: z.string().optional(), }), mcpServerName: z.string(), // Will be derived from pkg.name mcpServerVersion: z.string(), // Will be derived from pkg.version mcpServerDescription: z.string().optional(), // Will be derived from pkg.description logLevel: z .preprocess( (val) => { const str = emptyStringAsUndefined(val); if (typeof str === 'string') { const lower = str.toLowerCase(); const aliasMap: Record<string, string> = { warning: 'warn', err: 'error', information: 'info', }; return aliasMap[lower] ?? lower; } return str; }, z.enum(['fatal', 'error', 'warn', 'info', 'debug', 'trace', 'silent']), ) .default('debug'), logsPath: z.string().optional(), // Made optional as it's Node-specific environment: z .preprocess( (val) => { const str = emptyStringAsUndefined(val); if (typeof str === 'string') { const lower = str.toLowerCase(); const aliasMap: Record<string, string> = { dev: 'development', prod: 'production', test: 'testing', }; return aliasMap[lower] ?? lower; } return str; }, z.enum(['development', 'production', 'testing']), ) .default('development'), mcpTransportType: z.preprocess( emptyStringAsUndefined, z.enum(['stdio', 'http']).default('stdio'), ), mcpSessionMode: z.preprocess( emptyStringAsUndefined, z.enum(['stateless', 'stateful', 'auto']).default('auto'), ), mcpHttpPort: z.coerce.number().default(3017), mcpHttpHost: z.string().default('127.0.0.1'), mcpHttpEndpointPath: z.string().default('/mcp'), mcpHttpMaxPortRetries: z.coerce.number().default(15), mcpHttpPortRetryDelayMs: z.coerce.number().default(50), mcpStatefulSessionStaleTimeoutMs: z.coerce.number().default(1_800_000), mcpAllowedOrigins: z.array(z.string()).optional(), mcpAuthSecretKey: z.string().optional(), mcpAuthMode: z.preprocess( emptyStringAsUndefined, z.enum(['jwt', 'oauth', 'none']).default('none'), ), oauthIssuerUrl: z.string().url().optional(), oauthJwksUri: z.string().url().optional(), oauthAudience: z.string().optional(), oauthJwksCooldownMs: z.coerce.number().default(300_000), // 5 minutes oauthJwksTimeoutMs: z.coerce.number().default(5_000), // 5 seconds mcpServerResourceIdentifier: z.string().url().optional(), // RFC 8707 resource indicator devMcpClientId: z.string().optional(), devMcpScopes: z.array(z.string()).optional(), openrouterAppUrl: z.string().default('http://localhost:3000'), openrouterAppName: z.string(), openrouterApiKey: z.string().optional(), llmDefaultModel: z.string().default('google/gemini-2.5-flash'), llmDefaultTemperature: z.coerce.number().optional(), llmDefaultTopP: z.coerce.number().optional(), llmDefaultMaxTokens: z.coerce.number().optional(), llmDefaultTopK: z.coerce.number().optional(), llmDefaultMinP: z.coerce.number().optional(), oauthProxy: z .object({ authorizationUrl: z.string().url().optional(), tokenUrl: z.string().url().optional(), revocationUrl: z.string().url().optional(), issuerUrl: z.string().url().optional(), serviceDocumentationUrl: z.string().url().optional(), defaultClientRedirectUris: z.array(z.string()).optional(), }) .optional(), supabase: z .object({ url: z.string().url(), anonKey: z.string(), serviceRoleKey: z.string().optional(), }) .optional(), storage: z.object({ providerType: z .preprocess( (val) => { const str = emptyStringAsUndefined(val); if (typeof str === 'string') { const lower = str.toLowerCase(); const aliasMap: Record<string, string> = { mem: 'in-memory', fs: 'filesystem', }; return aliasMap[lower] ?? lower; } return str; }, z.enum([ 'in-memory', 'filesystem', 'supabase', 'cloudflare-r2', 'cloudflare-kv', ]), ) .default('in-memory'), filesystemPath: z.string().default('./.storage'), // This remains, but will only be used if providerType is 'filesystem' }), clinicalTrialsDataPath: z.string().optional(), maxStudiesForAnalysis: z.coerce.number().int().positive().default(5000), openTelemetry: z.object({ enabled: z.coerce.boolean().default(false), serviceName: z.string(), serviceVersion: z.string(), tracesEndpoint: z.string().url().optional(), metricsEndpoint: z.string().url().optional(), samplingRatio: z.coerce.number().default(1.0), logLevel: z .preprocess( (val) => { const str = emptyStringAsUndefined(val); if (typeof str === 'string') { const lower = str.toLowerCase(); const aliasMap: Record<string, string> = { err: 'ERROR', warning: 'WARN', information: 'INFO', }; return aliasMap[lower] ?? str.toUpperCase(); } return str; }, z.enum(['NONE', 'ERROR', 'WARN', 'INFO', 'DEBUG', 'VERBOSE', 'ALL']), ) .default('INFO'), }), speech: z .object({ tts: z .object({ enabled: z.coerce.boolean().default(false), provider: z.enum(['elevenlabs']).default('elevenlabs'), apiKey: z.string().optional(), baseUrl: z.string().url().optional(), defaultVoiceId: z.string().optional(), defaultModelId: z.string().optional(), timeout: z.coerce.number().optional(), }) .optional(), stt: z .object({ enabled: z.coerce.boolean().default(false), provider: z.enum(['openai-whisper']).default('openai-whisper'), apiKey: z.string().optional(), baseUrl: z.string().url().optional(), defaultModelId: z.string().optional(), timeout: z.coerce.number().optional(), }) .optional(), }) .optional(), });   // --- Parsing Logic --- const parseConfig = () => { const env = process.env;   const rawConfig = { pkg: { name: env.PACKAGE_NAME ?? packageManifest.name, version: env.PACKAGE_VERSION ?? packageManifest.version, description: env.PACKAGE_DESCRIPTION ?? packageManifest.description, }, logLevel: env.MCP_LOG_LEVEL, logsPath: env.LOGS_DIR, environment: env.NODE_ENV, mcpTransportType: env.MCP_TRANSPORT_TYPE, mcpSessionMode: env.MCP_SESSION_MODE, mcpHttpPort: env.MCP_HTTP_PORT, mcpHttpHost: env.MCP_HTTP_HOST, mcpHttpEndpointPath: env.MCP_HTTP_ENDPOINT_PATH, mcpHttpMaxPortRetries: env.MCP_HTTP_MAX_PORT_RETRIES, mcpHttpPortRetryDelayMs: env.MCP_HTTP_PORT_RETRY_DELAY_MS, mcpStatefulSessionStaleTimeoutMs: env.MCP_STATEFUL_SESSION_STALE_TIMEOUT_MS, mcpAllowedOrigins: env.MCP_ALLOWED_ORIGINS?.split(',') .map((o) => o.trim()) .filter(Boolean), mcpAuthSecretKey: env.MCP_AUTH_SECRET_KEY, mcpAuthMode: env.MCP_AUTH_MODE, oauthIssuerUrl: env.OAUTH_ISSUER_URL, oauthJwksUri: env.OAUTH_JWKS_URI, oauthAudience: env.OAUTH_AUDIENCE, oauthJwksCooldownMs: env.OAUTH_JWKS_COOLDOWN_MS, oauthJwksTimeoutMs: env.OAUTH_JWKS_TIMEOUT_MS, mcpServerResourceIdentifier: env.MCP_SERVER_RESOURCE_IDENTIFIER, devMcpClientId: env.DEV_MCP_CLIENT_ID, devMcpScopes: env.DEV_MCP_SCOPES?.split(',').map((s) => s.trim()), openrouterAppUrl: env.OPENROUTER_APP_URL, openrouterAppName: env.OPENROUTER_APP_NAME, openrouterApiKey: env.OPENROUTER_API_KEY, llmDefaultModel: env.LLM_DEFAULT_MODEL, llmDefaultTemperature: env.LLM_DEFAULT_TEMPERATURE, llmDefaultTopP: env.LLM_DEFAULT_TOP_P, llmDefaultMaxTokens: env.LLM_DEFAULT_MAX_TOKENS, llmDefaultTopK: env.LLM_DEFAULT_TOP_K, llmDefaultMinP: env.LLM_DEFAULT_MIN_P, oauthProxy: env.OAUTH_PROXY_AUTHORIZATION_URL || env.OAUTH_PROXY_TOKEN_URL ? { authorizationUrl: env.OAUTH_PROXY_AUTHORIZATION_URL, tokenUrl: env.OAUTH_PROXY_TOKEN_URL, revocationUrl: env.OAUTH_PROXY_REVOCATION_URL, issuerUrl: env.OAUTH_PROXY_ISSUER_URL, serviceDocumentationUrl: env.OAUTH_PROXY_SERVICE_DOCUMENTATION_URL, defaultClientRedirectUris: env.OAUTH_PROXY_DEFAULT_CLIENT_REDIRECT_URIS?.split(',') .map((uri) => uri.trim()) .filter(Boolean), } : undefined, supabase: env.SUPABASE_URL && env.SUPABASE_ANON_KEY ? { url: env.SUPABASE_URL, anonKey: env.SUPABASE_ANON_KEY, serviceRoleKey: env.SUPABASE_SERVICE_ROLE_KEY, } : undefined, storage: { providerType: env.STORAGE_PROVIDER_TYPE, filesystemPath: env.STORAGE_FILESYSTEM_PATH, }, clinicalTrialsDataPath: env.CLINICALTRIALS_DATA_PATH, maxStudiesForAnalysis: env.MAX_STUDIES_FOR_ANALYSIS, openTelemetry: { enabled: env.OTEL_ENABLED, serviceName: env.OTEL_SERVICE_NAME, serviceVersion: env.OTEL_SERVICE_VERSION, tracesEndpoint: env.OTEL_EXPORTER_OTLP_TRACES_ENDPOINT, metricsEndpoint: env.OTEL_EXPORTER_OTLP_METRICS_ENDPOINT, samplingRatio: env.OTEL_TRACES_SAMPLER_ARG, logLevel: env.OTEL_LOG_LEVEL, }, speech: env.SPEECH_TTS_ENABLED || env.SPEECH_STT_ENABLED ? { tts: env.SPEECH_TTS_ENABLED ? { enabled: env.SPEECH_TTS_ENABLED, provider: env.SPEECH_TTS_PROVIDER, apiKey: env.SPEECH_TTS_API_KEY, baseUrl: env.SPEECH_TTS_BASE_URL, defaultVoiceId: env.SPEECH_TTS_DEFAULT_VOICE_ID, defaultModelId: env.SPEECH_TTS_DEFAULT_MODEL_ID, timeout: env.SPEECH_TTS_TIMEOUT, } : undefined, stt: env.SPEECH_STT_ENABLED ? { enabled: env.SPEECH_STT_ENABLED, provider: env.SPEECH_STT_PROVIDER, apiKey: env.SPEECH_STT_API_KEY, baseUrl: env.SPEECH_STT_BASE_URL, defaultModelId: env.SPEECH_STT_DEFAULT_MODEL_ID, timeout: env.SPEECH_STT_TIMEOUT, } : undefined, } : undefined, // The following fields will be derived and are not directly from env mcpServerName: env.MCP_SERVER_NAME, mcpServerVersion: env.MCP_SERVER_VERSION, mcpServerDescription: env.MCP_SERVER_DESCRIPTION, };   // Use a temporary schema to parse package info and provide defaults const pkgSchema = z.object({ name: z.string(), version: z.string(), description: z.string().optional(), }); const parsedPkg = pkgSchema.parse(rawConfig.pkg);   // Now add the derived values to the main rawConfig object to be parsed const finalRawConfig = { ...rawConfig, pkg: parsedPkg, logsPath: rawConfig.logsPath ?? (hasFileSystemAccess ? 'logs' : undefined), mcpServerName: env.MCP_SERVER_NAME ?? parsedPkg.name, mcpServerVersion: env.MCP_SERVER_VERSION ?? parsedPkg.version, mcpServerDescription: env.MCP_SERVER_DESCRIPTION ?? parsedPkg.description, openTelemetry: { ...rawConfig.openTelemetry, serviceName: env.OTEL_SERVICE_NAME ?? parsedPkg.name, serviceVersion: env.OTEL_SERVICE_VERSION ?? parsedPkg.version, }, openrouterAppName: env.OPENROUTER_APP_NAME ?? parsedPkg.name, };   const parsedConfig = ConfigSchema.safeParse(finalRawConfig);   if (!parsedConfig.success) { // Keep existing TTY error logging for developer convenience. if (process.stdout.isTTY) { console.error( '❌ Invalid configuration found. Please check your environment variables.', parsedConfig.error.flatten().fieldErrors, ); } // Throw a specific, typed error instead of exiting. throw new McpError( JsonRpcErrorCode.ConfigurationError, 'Invalid application configuration.', { validationErrors: parsedConfig.error.flatten().fieldErrors, }, ); }   return parsedConfig.data; };   const config = parseConfig();   /** * Export the runtime configuration, parser, and schema, plus a static AppConfig type. */ export type AppConfig = z.infer<typeof ConfigSchema>;   export { config, ConfigSchema, parseConfig };  </pre></td></tr></table></pre> <div class='push'></div> </div> <div class='footer quiet pad2 space-top1 center small'> Code coverage generated by <a href="https://istanbul.js.org/" target="_blank" rel="noopener noreferrer">istanbul</a> at 2025-10-15T17:09:47.939Z </div> <script src="../../prettify.js"></script> <script> window.onload = function () { prettyPrint(); }; </script> <script src="../../sorter.js"></script> <script src="../../block-navigation.js"></script> </body> </html>

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