ChatSpatial

# Chinese translations for ChatSpatial package. # Copyright (C) 2026, ChatSpatial Project # This file is distributed under the same license as the ChatSpatial package. # Automatically generated, 2026. # msgid "" msgstr "" "Project-Id-Version: ChatSpatial 1.1\n" "Report-Msgid-Bugs-To: \n" "POT-Creation-Date: 2026-02-04 09:38-0600\n" "PO-Revision-Date: 2026-02-04 09:38-0600\n" "Last-Translator: Automatically generated\n" "Language-Team: none\n" "MIME-Version: 1.0\n" "Content-Type: text/plain; charset=UTF-8\n" "Content-Transfer-Encoding: 8bit\n" "Language: zh_CN\n" #: ../../advanced/methods-reference.md:1 msgid "Methods Reference" msgstr "方法参考" #: ../../advanced/methods-reference.md:3 msgid "All 20 ChatSpatial tools with parameters and options." msgstr "全部 20 个 ChatSpatial 工具及其参数与选项。" #: ../../advanced/methods-reference.md:7 msgid "Quick Reference" msgstr "快速索引" #: ../../advanced/methods-reference.md:0 msgid "Category" msgstr "分类" #: ../../advanced/methods-reference.md:0 msgid "Tools" msgstr "工具" #: ../../advanced/methods-reference.md:0 msgid "Data" msgstr "数据" #: ../../advanced/methods-reference.md:0 msgid "" "`load_data`, `preprocess_data`, `compute_embeddings`, `export_data`, " "`reload_data`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Spatial" msgstr "空间" #: ../../advanced/methods-reference.md:0 msgid "" "`analyze_spatial_statistics`, `find_spatial_genes`, " "`identify_spatial_domains`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Cells" msgstr "细胞" #: ../../advanced/methods-reference.md:0 msgid "`annotate_cell_types`, `deconvolve_data`, `analyze_cell_communication`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Genes" msgstr "基因" #: ../../advanced/methods-reference.md:0 msgid "`find_markers`, `compare_conditions`, `analyze_enrichment`" msgstr "" #: ../../advanced/methods-reference.md:0 #: ../../advanced/methods-reference.md:254 msgid "Dynamics" msgstr "动态" #: ../../advanced/methods-reference.md:0 msgid "`analyze_velocity_data`, `analyze_trajectory_data`, `analyze_cnv`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Multi-sample" msgstr "多样本" #: ../../advanced/methods-reference.md:0 msgid "`integrate_samples`, `register_spatial_data`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Output" msgstr "输出" #: ../../advanced/methods-reference.md:0 msgid "`visualize_data`" msgstr "" #: ../../advanced/methods-reference.md:21 msgid "Data Management" msgstr "数据管理" #: ../../advanced/methods-reference.md:23 msgid "load_data" msgstr "" #: ../../advanced/methods-reference.md:25 msgid "Load spatial transcriptomics data." msgstr "加载空间转录组数据。" #: ../../advanced/methods-reference.md:0 msgid "Parameter" msgstr "参数" #: ../../advanced/methods-reference.md:0 msgid "Type" msgstr "类型" #: ../../advanced/methods-reference.md:0 msgid "Description" msgstr "说明" #: ../../advanced/methods-reference.md:0 msgid "`data_path`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "str" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Path to file or folder" msgstr "文件或文件夹路径" #: ../../advanced/methods-reference.md:0 msgid "`data_type`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`visium`, `xenium`, `slide_seq`, `merfish`, `seqfish`, `generic`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`name`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Optional dataset name" msgstr "可选的数据集名称" #: ../../advanced/methods-reference.md:33 msgid "**Supported formats**: H5AD, 10X Visium folders, H5, MTX" msgstr "**支持的格式**：H5AD、10X Visium 文件夹、H5、MTX" #: ../../advanced/methods-reference.md:37 msgid "preprocess_data" msgstr "" #: ../../advanced/methods-reference.md:39 msgid "Normalize, filter, and prepare data." msgstr "归一化、过滤并准备数据。" #: ../../advanced/methods-reference.md:0 msgid "Default" msgstr "默认值" #: ../../advanced/methods-reference.md:0 msgid "`normalization`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`log`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`log`, `sct`, `pearson_residuals`, `scvi`, `none`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`n_hvgs`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "2000" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Highly variable genes" msgstr "高变基因数" #: ../../advanced/methods-reference.md:0 msgid "`n_pcs`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "30" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Principal components" msgstr "主成分数" #: ../../advanced/methods-reference.md:0 msgid "`n_neighbors`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "15" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Neighbor graph" msgstr "邻居图" #: ../../advanced/methods-reference.md:0 msgid "`clustering_resolution`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "1.0" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Leiden clustering" msgstr "Leiden 聚类" #: ../../advanced/methods-reference.md:0 msgid "`filter_genes_min_cells`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "3" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Min cells per gene" msgstr "每个基因的最小细胞数" #: ../../advanced/methods-reference.md:0 msgid "`filter_cells_min_genes`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Min genes per cell" msgstr "每个细胞的最小基因数" #: ../../advanced/methods-reference.md:0 msgid "`filter_mito_pct`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "20.0" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Max mitochondrial %" msgstr "线粒体比例上限（%）" #: ../../advanced/methods-reference.md:0 msgid "`scale`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "False" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Scale to unit variance before PCA" msgstr "PCA 前缩放到单位方差" #: ../../advanced/methods-reference.md:53 msgid "**Advanced options**:" msgstr "**高级选项：**" #: ../../advanced/methods-reference.md:0 msgid "`scrublet_enable`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Enable doublet detection (for single-cell resolution data)" msgstr "启用 doublet 检测（适用于单细胞分辨率数据）" #: ../../advanced/methods-reference.md:0 msgid "`normalize_target_sum`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "None" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Target counts per cell (None=median, 1e4=Visium, 1e6=MERFISH)" msgstr "每个细胞的目标计数（None=中位数，1e4=Visium，1e6=MERFISH）" #: ../../advanced/methods-reference.md:0 msgid "`remove_mito_genes`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "True" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Exclude mito genes from HVG" msgstr "从高变基因中排除线粒体基因" #: ../../advanced/methods-reference.md:0 msgid "`batch_key`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`batch`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Batch column for batch-aware normalization" msgstr "用于批次感知归一化的 batch 列" #: ../../advanced/methods-reference.md:64 msgid "compute_embeddings" msgstr "" #: ../../advanced/methods-reference.md:66 msgid "Compute dimensionality reduction and clustering." msgstr "计算降维结果与聚类。" #: ../../advanced/methods-reference.md:0 msgid "`compute_pca`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Compute PCA" msgstr "计算 PCA" #: ../../advanced/methods-reference.md:0 msgid "`compute_umap`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Compute UMAP" msgstr "计算 UMAP" #: ../../advanced/methods-reference.md:0 msgid "`compute_clustering`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`compute_spatial_neighbors`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Spatial graph" msgstr "空间图" #: ../../advanced/methods-reference.md:0 msgid "Clustering resolution" msgstr "聚类分辨率" #: ../../advanced/methods-reference.md:0 msgid "`force`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Recompute if exists" msgstr "若已存在则重新计算" #: ../../advanced/methods-reference.md:80 msgid "export_data / reload_data" msgstr "export_data / reload_data" #: ../../advanced/methods-reference.md:82 msgid "Export dataset for external scripts, reload after modifications." msgstr "导出数据集以供外部脚本使用，并在修改后重新加载。" #: ../../advanced/methods-reference.md:0 msgid "`data_id`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "required" msgstr "必填" #: ../../advanced/methods-reference.md:0 msgid "Dataset ID" msgstr "数据集 ID" #: ../../advanced/methods-reference.md:0 msgid "`path`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "auto" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Custom path (default: `~/.chatspatial/active/`)" msgstr "自定义路径（默认：`~/.chatspatial/active/`）" #: ../../advanced/methods-reference.md:91 msgid "Spatial Analysis" msgstr "空间分析" #: ../../advanced/methods-reference.md:93 msgid "analyze_spatial_statistics" msgstr "" #: ../../advanced/methods-reference.md:95 msgid "Analyze spatial patterns and autocorrelation." msgstr "分析空间模式与自相关。" #: ../../advanced/methods-reference.md:0 msgid "`analysis_type`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`neighborhood`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "See types below" msgstr "见下方类型" #: ../../advanced/methods-reference.md:0 msgid "`cluster_key`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Required for group-based analyses" msgstr "分组分析需要该参数" #: ../../advanced/methods-reference.md:0 msgid "`genes`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Specific genes to analyze" msgstr "指定要分析的基因" #: ../../advanced/methods-reference.md:0 msgid "`n_top_genes`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "20" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Top HVGs to analyze (if genes not specified)" msgstr "要分析的高变基因数量（未指定 genes 时）" #: ../../advanced/methods-reference.md:0 msgid "8" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Spatial neighbors" msgstr "空间邻居数" #: ../../advanced/methods-reference.md:105 msgid "**Analysis types**:" msgstr "**分析类型：**" #: ../../advanced/methods-reference.md:0 msgid "Requires cluster_key" msgstr "需要 cluster_key" #: ../../advanced/methods-reference.md:0 msgid "`moran`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Gene" msgstr "基因" #: ../../advanced/methods-reference.md:0 msgid "No" msgstr "否" #: ../../advanced/methods-reference.md:0 msgid "`local_moran`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`geary`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`getis_ord`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`bivariate_moran`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Group" msgstr "分组" #: ../../advanced/methods-reference.md:0 msgid "Yes" msgstr "是" #: ../../advanced/methods-reference.md:0 msgid "`co_occurrence`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`ripley`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`join_count`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`centrality`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Network" msgstr "网络" #: ../../advanced/methods-reference.md:0 msgid "Optional" msgstr "可选" #: ../../advanced/methods-reference.md:122 msgid "find_spatial_genes" msgstr "" #: ../../advanced/methods-reference.md:124 msgid "Identify spatially variable genes." msgstr "识别空间变异基因。" #: ../../advanced/methods-reference.md:0 msgid "`method`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`sparkx`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`sparkx`, `spatialde`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Top genes to return (None = all significant)" msgstr "返回的基因数量（None=返回所有显著基因）" #: ../../advanced/methods-reference.md:133 msgid "identify_spatial_domains" msgstr "" #: ../../advanced/methods-reference.md:135 msgid "Find tissue domains and spatial niches." msgstr "识别组织区域与空间微环境。" #: ../../advanced/methods-reference.md:0 msgid "`spagcn`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`spagcn`, `stagate`, `graphst`, `leiden`, `louvain`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`n_domains`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "7" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Expected number of domains" msgstr "期望的区域数量" #: ../../advanced/methods-reference.md:0 msgid "`resolution`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "0.5" msgstr "" #: ../../advanced/methods-reference.md:145 msgid "Cell Analysis" msgstr "细胞分析" #: ../../advanced/methods-reference.md:147 msgid "annotate_cell_types" msgstr "" #: ../../advanced/methods-reference.md:149 msgid "Assign cell types." msgstr "分配细胞类型。" #: ../../advanced/methods-reference.md:0 msgid "`tangram`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "See methods below" msgstr "见下方方法" #: ../../advanced/methods-reference.md:0 msgid "`reference_data_id`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Reference dataset (for transfer methods)" msgstr "参考数据集（用于 label transfer 方法）" #: ../../advanced/methods-reference.md:0 msgid "`cell_type_key`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Cell type column in reference" msgstr "参考数据中的细胞类型列" #: ../../advanced/methods-reference.md:0 msgid "`marker_genes`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Marker dict (for CellAssign)" msgstr "marker 字典（用于 CellAssign）" #: ../../advanced/methods-reference.md:158 #: ../../advanced/methods-reference.md:181 msgid "**Methods**:" msgstr "**方法：**" #: ../../advanced/methods-reference.md:0 msgid "Method" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Requires Reference" msgstr "需要参考数据" #: ../../advanced/methods-reference.md:0 msgid "Notes" msgstr "备注" #: ../../advanced/methods-reference.md:0 msgid "Spatial mapping" msgstr "空间映射" #: ../../advanced/methods-reference.md:0 msgid "`scanvi`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Deep learning transfer" msgstr "深度学习迁移" #: ../../advanced/methods-reference.md:0 msgid "`cellassign`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Marker-based" msgstr "基于 marker" #: ../../advanced/methods-reference.md:0 msgid "`sctype`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Automatic (R)" msgstr "自动（R）" #: ../../advanced/methods-reference.md:0 msgid "`singler`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Reference-based (R)" msgstr "基于参考（R）" #: ../../advanced/methods-reference.md:0 msgid "`mllmcelltype`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "LLM-based" msgstr "基于 LLM" #: ../../advanced/methods-reference.md:171 msgid "deconvolve_data" msgstr "" #: ../../advanced/methods-reference.md:173 msgid "Estimate cell type proportions per spot." msgstr "估计每个 spot 的细胞类型比例。" #: ../../advanced/methods-reference.md:0 msgid "`flashdeconv`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Reference dataset" msgstr "参考数据集" #: ../../advanced/methods-reference.md:0 msgid "Speed" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "GPU" msgstr "GPU" #: ../../advanced/methods-reference.md:0 msgid "Fast" msgstr "快" #: ../../advanced/methods-reference.md:0 msgid "Default, recommended" msgstr "默认，推荐" #: ../../advanced/methods-reference.md:0 msgid "`cell2location`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Slow" msgstr "慢" #: ../../advanced/methods-reference.md:0 msgid "High accuracy" msgstr "高准确性" #: ../../advanced/methods-reference.md:0 msgid "`rctd`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "R-based" msgstr "基于 R" #: ../../advanced/methods-reference.md:0 msgid "`destvi`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Medium" msgstr "中等" #: ../../advanced/methods-reference.md:0 msgid "scvi-tools" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`stereoscope`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Alternative DL" msgstr "替代的深度学习方法" #: ../../advanced/methods-reference.md:0 msgid "`spotlight`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`card`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "R-based, imputation" msgstr "基于 R，含插补" #: ../../advanced/methods-reference.md:196 msgid "analyze_cell_communication" msgstr "" #: ../../advanced/methods-reference.md:198 msgid "Analyze ligand-receptor interactions." msgstr "分析配体-受体相互作用。" #: ../../advanced/methods-reference.md:0 msgid "`fastccc`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`fastccc`, `liana`, `cellphonedb`, `cellchat_r`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`species`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`human`, `mouse`, `zebrafish`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Cell type column" msgstr "细胞类型列" #: ../../advanced/methods-reference.md:0 msgid "`liana_resource`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`consensus`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "LR database (`mouseconsensus` for mouse)" msgstr "配体-受体（LR）数据库（小鼠用 `mouseconsensus`）" #: ../../advanced/methods-reference.md:209 msgid "Gene Analysis" msgstr "基因分析" #: ../../advanced/methods-reference.md:211 msgid "find_markers" msgstr "" #: ../../advanced/methods-reference.md:213 msgid "Find differentially expressed genes." msgstr "寻找差异表达基因。" #: ../../advanced/methods-reference.md:0 msgid "`group_key`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Grouping column" msgstr "分组列" #: ../../advanced/methods-reference.md:0 msgid "`group1`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "First group (None = each vs rest)" msgstr "第一组（None=每组 vs 其余）" #: ../../advanced/methods-reference.md:0 msgid "`group2`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Second group" msgstr "第二组" #: ../../advanced/methods-reference.md:0 msgid "`wilcoxon`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`wilcoxon`, `t-test`, `t-test_overestim_var`, `logreg`, `pydeseq2`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "50" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Top genes per group" msgstr "每组 top 基因数" #: ../../advanced/methods-reference.md:225 msgid "compare_conditions" msgstr "" #: ../../advanced/methods-reference.md:227 msgid "Compare experimental conditions (pseudobulk DESeq2)." msgstr "比较实验条件（pseudobulk DESeq2）。" #: ../../advanced/methods-reference.md:0 msgid "`condition_key`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Condition column" msgstr "条件列" #: ../../advanced/methods-reference.md:0 msgid "`condition1`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Treatment group" msgstr "处理组" #: ../../advanced/methods-reference.md:0 msgid "`condition2`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Control group" msgstr "对照组" #: ../../advanced/methods-reference.md:0 msgid "`sample_key`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Sample/patient column" msgstr "样本/患者列" #: ../../advanced/methods-reference.md:0 msgid "Stratify by cell type" msgstr "按细胞类型分层" #: ../../advanced/methods-reference.md:0 msgid "Top DEGs" msgstr "Top 差异基因数" #: ../../advanced/methods-reference.md:240 msgid "analyze_enrichment" msgstr "" #: ../../advanced/methods-reference.md:242 msgid "Gene set enrichment analysis." msgstr "基因集富集分析。" #: ../../advanced/methods-reference.md:0 msgid "`pathway_ora`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`pathway_ora`, `pathway_gsea`, `pathway_ssgsea`, `spatial_enrichmap`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`gene_set_database`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`GO_Biological_Process`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "See databases below" msgstr "见下方数据库" #: ../../advanced/methods-reference.md:250 msgid "" "**Databases**: `GO_Biological_Process`, `GO_Molecular_Function`, " "`KEGG_Pathways`, `Reactome_Pathways`, `MSigDB_Hallmark`" msgstr "" "**数据库**：`GO_Biological_Process`、`GO_Molecular_Function`、`KEGG_Pathways`、`Reactome_Pathways`、`MSigDB_Hallmark`" #: ../../advanced/methods-reference.md:256 msgid "analyze_velocity_data" msgstr "" #: ../../advanced/methods-reference.md:258 msgid "RNA velocity analysis." msgstr "RNA velocity 分析。" #: ../../advanced/methods-reference.md:0 msgid "`scvelo`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`scvelo`, `velovi`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`mode`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`stochastic`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`deterministic`, `stochastic`, `dynamical`" msgstr "" #: ../../advanced/methods-reference.md:265 msgid "**Requires**: `spliced` and `unspliced` layers" msgstr "**需要**：`spliced` 与 `unspliced` layers" #: ../../advanced/methods-reference.md:269 msgid "analyze_trajectory_data" msgstr "" #: ../../advanced/methods-reference.md:271 msgid "Trajectory and pseudotime inference." msgstr "轨迹与伪时间推断。" #: ../../advanced/methods-reference.md:0 msgid "`cellrank`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`cellrank`, `palantir`, `dpt`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`root_cells`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Starting cells" msgstr "起始细胞" #: ../../advanced/methods-reference.md:278 msgid "**Note**: CellRank requires velocity data" msgstr "**注意**：CellRank 需要 velocity 数据" #: ../../advanced/methods-reference.md:282 msgid "analyze_cnv" msgstr "" #: ../../advanced/methods-reference.md:284 msgid "Copy number variation detection." msgstr "拷贝数变异（CNV）检测。" #: ../../advanced/methods-reference.md:0 msgid "`infercnvpy`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`infercnvpy`, `numbat`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`reference_key`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`reference_categories`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Normal cell types" msgstr "正常细胞类型" #: ../../advanced/methods-reference.md:294 msgid "Multi-Sample" msgstr "多样本" #: ../../advanced/methods-reference.md:296 msgid "integrate_samples" msgstr "" #: ../../advanced/methods-reference.md:298 msgid "Batch integration." msgstr "批次整合。" #: ../../advanced/methods-reference.md:0 msgid "`data_ids`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "List of dataset IDs" msgstr "数据集 ID 列表" #: ../../advanced/methods-reference.md:0 msgid "`harmony`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`harmony`, `bbknn`, `scanorama`, `scvi`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Batch column" msgstr "批次列" #: ../../advanced/methods-reference.md:308 msgid "register_spatial_data" msgstr "" #: ../../advanced/methods-reference.md:310 msgid "Align spatial sections." msgstr "对齐空间切片。" #: ../../advanced/methods-reference.md:0 msgid "`source_id`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Source dataset" msgstr "源数据集" #: ../../advanced/methods-reference.md:0 msgid "`target_id`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Target dataset" msgstr "目标数据集" #: ../../advanced/methods-reference.md:0 msgid "`paste`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`paste`, `stalign`" msgstr "" #: ../../advanced/methods-reference.md:320 msgid "Visualization" msgstr "可视化" #: ../../advanced/methods-reference.md:322 msgid "visualize_data" msgstr "" #: ../../advanced/methods-reference.md:324 msgid "Create all plot types." msgstr "生成所有类型的图。" #: ../../advanced/methods-reference.md:0 msgid "`plot_type`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`feature`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`subtype`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Visualization variant" msgstr "可视化子类型" #: ../../advanced/methods-reference.md:0 msgid "Gene(s) or column to show" msgstr "要展示的基因或列" #: ../../advanced/methods-reference.md:0 msgid "`basis`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`spatial`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`spatial`, `umap`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`colormap`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`coolwarm`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Color scheme" msgstr "配色方案" #: ../../advanced/methods-reference.md:0 msgid "`dpi`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "300" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Resolution" msgstr "分辨率" #: ../../advanced/methods-reference.md:0 msgid "`output_format`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`png`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`png`, `pdf`, `svg`" msgstr "" #: ../../advanced/methods-reference.md:337 msgid "**Plot types and subtypes**:" msgstr "**图形类型与子类型：**" #: ../../advanced/methods-reference.md:0 msgid "Subtypes" msgstr "子类型" #: ../../advanced/methods-reference.md:0 msgid "Use" msgstr "用途" #: ../../advanced/methods-reference.md:0 msgid "—" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Gene/metadata on spatial or UMAP" msgstr "在 spatial 或 UMAP 上展示基因/元数据" #: ../../advanced/methods-reference.md:0 msgid "`expression`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`heatmap`, `violin`, `dotplot`, `correlation`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Aggregated expression" msgstr "汇总表达" #: ../../advanced/methods-reference.md:0 msgid "`deconvolution`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`spatial_multi`, `pie`, `dominant`, `diversity`, `umap`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Cell proportions" msgstr "细胞比例" #: ../../advanced/methods-reference.md:0 msgid "`communication`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`dotplot`, `tileplot`, `circle_plot`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "LR interactions" msgstr "LR 相互作用" #: ../../advanced/methods-reference.md:0 msgid "`interaction`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Spatial LR pairs" msgstr "空间 LR 配对" #: ../../advanced/methods-reference.md:0 msgid "`trajectory`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`pseudotime`, `fate_map`, `gene_trends`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Pseudotime" msgstr "伪时间" #: ../../advanced/methods-reference.md:0 msgid "`velocity`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`stream`, `phase`, `paga`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "RNA velocity" msgstr "RNA velocity" #: ../../advanced/methods-reference.md:0 msgid "`statistics`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`neighborhood`, `co_occurrence`, `ripley`, `moran`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Spatial stats" msgstr "空间统计" #: ../../advanced/methods-reference.md:0 msgid "`enrichment`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`barplot`, `dotplot`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Pathway results" msgstr "通路结果" #: ../../advanced/methods-reference.md:0 msgid "`cnv`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`heatmap`, `spatial`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "CNV results" msgstr "CNV 结果" #: ../../advanced/methods-reference.md:0 msgid "`integration`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "`batch`, `cluster`" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Integration QC" msgstr "整合质控" #: ../../advanced/methods-reference.md:355 msgid "GPU Acceleration" msgstr "GPU 加速" #: ../../advanced/methods-reference.md:357 msgid "Set `use_gpu=True` for these methods:" msgstr "对以下方法设置 `use_gpu=True`：" #: ../../advanced/methods-reference.md:0 msgid "Methods" msgstr "方法" #: ../../advanced/methods-reference.md:0 msgid "Preprocessing" msgstr "预处理" #: ../../advanced/methods-reference.md:0 msgid "scVI normalization" msgstr "scVI 归一化" #: ../../advanced/methods-reference.md:0 msgid "Annotation" msgstr "注释" #: ../../advanced/methods-reference.md:0 msgid "Tangram, scANVI" msgstr "Tangram, scANVI" #: ../../advanced/methods-reference.md:0 msgid "Deconvolution" msgstr "去卷积" #: ../../advanced/methods-reference.md:0 msgid "Cell2location, DestVI, Stereoscope, Tangram" msgstr "Cell2location, DestVI, Stereoscope, Tangram" #: ../../advanced/methods-reference.md:0 msgid "Domains" msgstr "区域" #: ../../advanced/methods-reference.md:0 msgid "STAGATE, GraphST" msgstr "STAGATE, GraphST" #: ../../advanced/methods-reference.md:0 msgid "Velocity" msgstr "速度" #: ../../advanced/methods-reference.md:0 msgid "VeloVI" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "Integration" msgstr "整合" #: ../../advanced/methods-reference.md:0 msgid "scVI" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "CNV" msgstr "" #: ../../advanced/methods-reference.md:0 msgid "inferCNVpy" msgstr "" #: ../../advanced/methods-reference.md:371 msgid "Next Steps" msgstr "下一步" #: ../../advanced/methods-reference.md:373 msgid "[Examples](../examples.md) — See methods in action" msgstr "[示例](../examples.md) — 查看方法如何实际使用" #: ../../advanced/methods-reference.md:374 msgid "[Concepts](../concepts.md) — When to use which method" msgstr "[概念](../concepts.md) — 何时该用哪种方法" #: ../../advanced/methods-reference.md:375 msgid "[Troubleshooting](troubleshooting.md) — Common issues and fixes" msgstr "[故障排查](troubleshooting.md) — 常见问题与解决方案"