BioContextAI Knowledgebase MCP

name: Test Package on: schedule: # run every Wednesday at 17:00 UTC - cron: "0 17 * * 3" push: branches: [main, dev] pull_request: branches: [main] jobs: build: runs-on: ubuntu-latest strategy: fail-fast: true matrix: include: - os: ubuntu-24.04 python: "3.12" name: Python ${{ matrix.python }} env: OS: ${{ matrix.os }} PYTHON: ${{ matrix.python }} steps: - uses: actions/checkout@v3 - name: Set up Python ${{ matrix.python-version }} uses: actions/setup-python@v3 with: python-version: ${{ matrix.python-version }} - uses: actions/cache@v3 with: path: ${{ env.pythonLocation }} key: ${{ env.pythonLocation }}-${{ hashFiles('pyproject.toml') }} - name: Install the latest version of uv uses: astral-sh/setup-uv@v6 with: version: "latest" - name: Install dependencies run: | uv sync - name: Lint with ruff run: | uv run ruff check --fix --exit-non-zero-on-fix src - name: Format with ruff run: | uv run ruff format --check src - name: Test with pytest run: | uv run pytest --cov=biocontext_kb --cov-report=term-missing --maxfail=5 -m "not no_ci" uv run coverage xml - name: Upload coverage to Codecov uses: codecov/codecov-action@v4 with: token: ${{ secrets.CODECOV_TOKEN }}