Server Configuration
Describes the environment variables required to run the server.
| Name | Required | Description | Default |
|---|---|---|---|
| BIO_MCP_TIMEOUT | No | Command timeout in seconds (default: 1800) | 1800 |
| BIO_MCP_TEMP_DIR | No | Temporary directory for processing | |
| BIO_MCP_QUEUE_URL | No | URL for the queue API (e.g., http://queue-api:8000) used for async processing for large datasets | |
| BIO_MCP_FASTQC_PATH | No | Path to FastQC executable (default: "fastqc") | fastqc |
| BIO_MCP_MULTIQC_PATH | No | Path to MultiQC executable (default: "multiqc") | multiqc |
| BIO_MCP_MAX_FILE_SIZE | No | Maximum file size in bytes (default: 10GB) | 10GB |
Tools
Functions exposed to the LLM to take actions
| Name | Description |
|---|---|
No tools | |
Prompts
Interactive templates invoked by user choice
| Name | Description |
|---|---|
No prompts | |
Resources
Contextual data attached and managed by the client
| Name | Description |
|---|---|
No resources | |