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# Python
__pycache__/
*.py[cod]
*$py.class
*.so
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST
# Virtual environments
venv/
ENV/
env/
.venv
# IDE
.vscode/
.idea/
*.swp
*.swo
*~
# Testing
.pytest_cache/
.coverage
htmlcov/
.tox/
.hypothesis/
# Temporary files
*.tmp
*.temp
/tmp/
# OS
.DS_Store
Thumbs.db
# Project specific
/data/
/output/
/temp/
*.log
# Model files
*.pth
*.pt
*.bin
*.safetensors
checkpoints/
models/
evo2_*/
model_cache/
# Bioinformatics data files
*.fasta
*.fa
*.fastq
*.fq
*.bam
*.sam
*.vcf
*.bed
*.gff
*.gtf
# Singularity/Docker images
*.sif
*.simg
# SLURM logs
slurm-*.out
slurm-*.err