# Implementation Plan
- [ ] 1. Set up enhanced project structure and core interfaces
- Create directory structure for new components (github, research, tui, knowledge)
- Define TypeScript interfaces for all new data models and services
- Set up SQLite database schema and migration system
- _Requirements: 1.1, 4.1, 6.1_
- [ ] 2. Implement SQLite knowledge base foundation
- [ ] 2.1 Create SQLite database schema and indexes
- Implement database initialization with full-text search tables
- Create migration system for schema updates
- Add database connection pooling and error handling
- _Requirements: 6.1, 6.2, 4.2_
- [ ] 2.2 Build knowledge base query interface
- Implement CRUD operations for repositories, patterns, and concepts
- Create full-text search functionality using FTS5
- Add data validation and sanitization
- Write unit tests for database operations
- _Requirements: 6.1, 6.3, 4.3_
- [ ] 2.3 Implement CSV export integration with ES tools
- Create CSV export functionality using Everything's native tools
- Add structured data formatting for research results
- Implement batch export capabilities for large datasets
- Write tests for CSV export functionality
- _Requirements: 6.4, 4.4_
- [ ] 3. Build GitHub integration layer
- [ ] 3.1 Implement GitHub MCP client integration
- Create GitHub MCP connection and communication layer
- Add fallback to direct GitHub API when MCP unavailable
- Implement authentication handling for GitHub API
- Write integration tests for GitHub connectivity
- _Requirements: 1.1, 1.2, 1.4_
- [ ] 3.2 Create GitHub search and repository analysis
- Implement multi-strategy GitHub search (keyword, topic, code)
- Add repository metadata extraction and quality assessment
- Create license compatibility checking
- Write tests for GitHub search functionality
- _Requirements: 1.2, 1.3, 6.3_
- [ ] 3.3 Build combined local/remote search capabilities
- Implement unified search interface for local and GitHub results
- Add cross-referencing between local files and GitHub repositories
- Create relevance scoring for combined results
- Write integration tests for combined search
- _Requirements: 1.2, 1.3, 2.3_
- [ ] 4. Implement intent-based research engine
- [ ] 4.1 Create specification parser and intent generator
- Build parser for requirements.md and design.md files
- Implement NLP-based intent extraction from specifications
- Create goal and constraint identification system
- Write unit tests for specification parsing
- _Requirements: 2.1, 2.2, 7.1_
- [ ] 4.2 Build concept discovery and pattern recognition
- Implement adjacent concept discovery using NLP techniques
- Create code pattern analysis and extraction system
- Add pattern similarity matching and clustering
- Write tests for pattern recognition accuracy
- _Requirements: 2.2, 2.4, 6.4_
- [ ] 4.3 Create deep research orchestration system
- Implement research pipeline coordinator
- Add progress tracking and result aggregation
- Create quality scoring and relevance ranking
- Write integration tests for full research workflow
- _Requirements: 2.1, 2.3, 2.4_
- [ ] 5. Build Terminal User Interface (TUI)
- [ ] 5.1 Set up TUI framework and basic screens
- Install and configure blessed or ink framework
- Create basic screen layout and navigation system
- Implement keyboard and mouse input handling
- Write tests for TUI component rendering
- _Requirements: 3.1, 3.2, 3.5_
- [ ] 5.2 Implement dashboard and search interface screens
- Create project overview dashboard with metrics
- Build interactive search interface with real-time filtering
- Add result categorization and sorting capabilities
- Write tests for screen interactions and data display
- _Requirements: 3.1, 3.3, 3.5_
- [ ] 5.3 Create specification reporting and research screens
- Implement specification status and progress reporting
- Build deep research interface with progress monitoring
- Add implementation suggestions display
- Write tests for complex screen interactions
- _Requirements: 3.4, 3.5, 2.5_
- [ ] 6. Enhance existing MCP tools with new capabilities
- [ ] 6.1 Upgrade existing search tools with research features
- Enhance everything_search with specification awareness
- Add GitHub integration to everything_search_advanced
- Upgrade everything_search_docs with intent-based features
- Write backward compatibility tests
- _Requirements: 2.1, 2.2, 7.2_
- [ ] 6.2 Implement new research-focused MCP tools
- Create everything_deep_research tool for intent-based search
- Implement everything_build_knowledge for knowledge base management
- Add everything_suggest_implementation for AI recommendations
- Write comprehensive tests for new tools
- _Requirements: 2.1, 2.2, 2.4, 6.2_
- [ ] 6.3 Create utility and management tools
- Implement everything_export_csv for structured data export
- Add everything_discover_concepts for concept exploration
- Create everything_tui_launch for TUI interface access
- Write integration tests for utility tools
- _Requirements: 3.1, 6.4, 2.2_
- [ ] 7. Build comprehensive logging and testing framework
- [ ] 7.1 Enhance logging harness with structured logging
- Implement structured JSON logging with correlation IDs
- Add performance metrics collection and analysis
- Create error tracking with full context capture
- Write tests for logging functionality
- _Requirements: 4.1, 4.2, 4.4_
- [ ] 7.2 Create hello world test suite
- Implement comprehensive hello world test covering all features
- Add integration tests for GitHub MCP connection
- Create TUI component testing framework
- Write performance benchmarking tests
- _Requirements: 4.3, 4.4, 4.5_
- [ ] 7.3 Build debugging and diagnostic tools
- Implement system state capture and debug report generation
- Add configuration validation and dependency checking
- Create automated troubleshooting recommendations
- Write tests for diagnostic functionality
- _Requirements: 4.4, 4.5, 5.4_
- [ ] 8. Implement one-click Kiro installation system
- [ ] 8.1 Create dependency detection and validation
- Implement automatic detection of Everything, Node.js, and GitHub CLI
- Add Kiro configuration discovery and validation
- Create dependency installation guidance system
- Write tests for dependency detection accuracy
- _Requirements: 5.1, 5.2, 5.5_
- [ ] 8.2 Build MCP configuration generator
- Implement automatic Kiro MCP configuration generation
- Add optimized settings for spec-driven development workflow
- Create configuration backup and migration system
- Write tests for configuration generation
- _Requirements: 5.1, 5.3, 5.5_
- [ ] 8.3 Create installation orchestration and verification
- Implement one-click installation command
- Add installation progress tracking and error recovery
- Create post-installation verification and testing
- Write comprehensive installation tests
- _Requirements: 5.1, 5.4, 5.5_
- [ ] 9. Enhance voidtools integration and advanced features
- [ ] 9.1 Implement advanced Everything integration
- Add support for all Everything command-line options
- Implement Everything Toolbar and Command Line integration
- Create fallback search using Windows indexing
- Write tests for advanced Everything features
- _Requirements: 6.1, 6.2, 6.5_
- [ ] 9.2 Build performance optimization and caching
- Implement multi-layer caching for search results and patterns
- Add lazy loading for TUI components and GitHub integration
- Create background processing for knowledge base updates
- Write performance tests and benchmarking
- _Requirements: 6.4, 6.5, 4.2_
- [ ] 9.3 Create result optimization and streaming
- Implement pagination and streaming for large result sets
- Add result optimization based on user preferences
- Create intelligent caching based on usage patterns
- Write tests for large-scale data handling
- _Requirements: 6.5, 6.4_
- [ ] 10. Implement SpecStory integration enhancements
- [ ] 10.1 Build SpecStory document structure understanding
- Implement SpecStory metadata parsing and extraction
- Add document structure analysis for SpecStory formats
- Create version history tracking for documentation
- Write tests for SpecStory document processing
- _Requirements: 7.1, 7.2, 7.3_
- [ ] 10.2 Create SpecStory workflow integration
- Implement documentation completeness validation
- Add consistency checking across specification documents
- Create SpecStory-compatible export formats
- Write integration tests for SpecStory workflows
- _Requirements: 7.2, 7.4, 7.5_
- [ ] 11. Final integration and deployment preparation
- [ ] 11.1 Integrate all components and test full system
- Wire together all components into cohesive system
- Run comprehensive integration tests across all features
- Perform end-to-end workflow testing with real specifications
- Validate performance under realistic usage scenarios
- _Requirements: All requirements integration_
- [ ] 11.2 Create documentation and deployment artifacts
- Write comprehensive user documentation and API reference
- Create installation guides and troubleshooting documentation
- Build deployment scripts and packaging configuration
- Prepare release artifacts and version management
- _Requirements: 5.1, 5.4, 4.5_
- [ ] 11.3 Perform final validation and optimization
- Run full test suite and performance benchmarks
- Validate all requirements coverage and acceptance criteria
- Optimize performance based on testing results
- Prepare for production deployment and user feedback
- _Requirements: All requirements validation_
