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<h1 id="mcp-reference-natural-language-queries">MCP Reference & Natural Language Queries</h1>
<p>This page lists all available <strong>MCP Tools</strong> that your AI assistant (Cursor, Claude, VS Code) can use.</p>
<p>When you ask a question in natural language, the AI selects one of these tools behind the scenes.</p>
<div class="admonition tip">
<p class="admonition-title">File Exclusion</p>
<p>You can control what gets indexed using <code>.cgcignore</code>.
<a href="../cgcignore/"><strong>📄 Read the Guide</strong></a></p>
</div>
<h2 id="core-analysis-tools">Core Analysis Tools</h2>
<p>These are the most commonly used tools for understanding code.</p>
<table>
<thead>
<tr>
<th style="text-align: left;">Tool Name</th>
<th style="text-align: left;">Description</th>
<th style="text-align: left;">Natural Language Example</th>
</tr>
</thead>
<tbody>
<tr>
<td style="text-align: left;"><strong><code>find_code</code></strong></td>
<td style="text-align: left;">Search for code by name or fuzzy text.</td>
<td style="text-align: left;">"Where is the <code>User</code> class defined?"</td>
</tr>
<tr>
<td style="text-align: left;"><strong><code>analyze_code_relationships</code></strong></td>
<td style="text-align: left;">The swiss-army knife for call graphs and dependencies.</td>
<td style="text-align: left;">"Find all callers of <code>process_payment</code>."</td>
</tr>
<tr>
<td style="text-align: left;"><strong><code>calculate_cyclomatic_complexity</code></strong></td>
<td style="text-align: left;">Measure function complexity.</td>
<td style="text-align: left;">"What is the complexity of <code>main</code>?"</td>
</tr>
<tr>
<td style="text-align: left;"><strong><code>find_most_complex_functions</code></strong></td>
<td style="text-align: left;">List the hardest-to-maintain functions.</td>
<td style="text-align: left;">"Show me the 5 most complex functions."</td>
</tr>
<tr>
<td style="text-align: left;"><strong><code>find_dead_code</code></strong></td>
<td style="text-align: left;">Identify unused functions.</td>
<td style="text-align: left;">"Find dead code, but ignore <code>@route</code>."</td>
</tr>
</tbody>
</table>
<h2 id="system-management">System & Management</h2>
<p>Tools for managing the graph and background jobs.</p>
<table>
<thead>
<tr>
<th style="text-align: left;">Tool Name</th>
<th style="text-align: left;">Description</th>
<th style="text-align: left;">Natural Language Example</th>
</tr>
</thead>
<tbody>
<tr>
<td style="text-align: left;"><strong><code>monitor_directory</code></strong></td>
<td style="text-align: left;">Start monitoring a folder (Alias: <code>watch_directory</code>)</td>
<td style="text-align: left;">"Watch the <code>src</code> folder."</td>
</tr>
<tr>
<td style="text-align: left;"><strong><code>list_watched_paths</code></strong></td>
<td style="text-align: left;">See what is being monitored.</td>
<td style="text-align: left;">"What directories are being watched?"</td>
</tr>
<tr>
<td style="text-align: left;"><strong><code>unwatch_directory</code></strong></td>
<td style="text-align: left;">Stop monitoring a folder.</td>
<td style="text-align: left;">"Stop watching <code>src</code>."</td>
</tr>
<tr>
<td style="text-align: left;"><strong><code>list_indexed_repositories</code></strong></td>
<td style="text-align: left;">Show what projects are currently indexed.</td>
<td style="text-align: left;">"What repos are indexed?"</td>
</tr>
<tr>
<td style="text-align: left;"><strong><code>get_repository_stats</code></strong></td>
<td style="text-align: left;">Show counts of files, classes, LOC.</td>
<td style="text-align: left;">"Show stats for the backend repo."</td>
</tr>
<tr>
<td style="text-align: left;"><strong><code>delete_repository</code></strong></td>
<td style="text-align: left;">Remove a repo from the graph.</td>
<td style="text-align: left;">"Remove the frontend repo."</td>
</tr>
<tr>
<td style="text-align: left;"><strong><code>add_code_to_graph</code></strong></td>
<td style="text-align: left;">Manually add a specific path.</td>
<td style="text-align: left;">"Add the <code>lib</code> folder."</td>
</tr>
<tr>
<td style="text-align: left;"><strong><code>add_package_to_graph</code></strong></td>
<td style="text-align: left;">Index an external library/package.</td>
<td style="text-align: left;">"Add the <code>requests</code> library."</td>
</tr>
</tbody>
</table>
<h2 id="job-control">Job Control</h2>
<table>
<thead>
<tr>
<th style="text-align: left;">Tool Name</th>
<th style="text-align: left;">Description</th>
<th style="text-align: left;">Natural Language Example</th>
</tr>
</thead>
<tbody>
<tr>
<td style="text-align: left;"><strong><code>list_jobs</code></strong></td>
<td style="text-align: left;">View all background tasks.</td>
<td style="text-align: left;">"Show me active jobs."</td>
</tr>
<tr>
<td style="text-align: left;"><strong><code>check_job_status</code></strong></td>
<td style="text-align: left;">Check if a specific job is done.</td>
<td style="text-align: left;">"Is job <code>xyz</code> finished?"</td>
</tr>
</tbody>
</table>
<h2 id="bundles-registry">Bundles & Registry</h2>
<table>
<thead>
<tr>
<th style="text-align: left;">Tool Name</th>
<th style="text-align: left;">Description</th>
<th style="text-align: left;">Natural Language Example</th>
</tr>
</thead>
<tbody>
<tr>
<td style="text-align: left;"><strong><code>search_registry_bundles</code></strong></td>
<td style="text-align: left;">Find shared graphs in the cloud.</td>
<td style="text-align: left;">"Search for a <code>flask</code> bundle."</td>
</tr>
<tr>
<td style="text-align: left;"><strong><code>load_bundle</code></strong></td>
<td style="text-align: left;">Install a graph bundle.</td>
<td style="text-align: left;">"Load the <code>flask</code> bundle."</td>
</tr>
</tbody>
</table>
<h2 id="advanced-querying">Advanced Querying</h2>
<p>For complex questions that standard tools can't answer.</p>
<table>
<thead>
<tr>
<th style="text-align: left;">Tool Name</th>
<th style="text-align: left;">Description</th>
<th style="text-align: left;">Natural Language Example</th>
</tr>
</thead>
<tbody>
<tr>
<td style="text-align: left;"><strong><code>execute_cypher_query</code></strong></td>
<td style="text-align: left;">Run a raw read-only database query.</td>
<td style="text-align: left;">"Find all recursive functions."</td>
</tr>
<tr>
<td style="text-align: left;"><strong><code>visualize_graph_query</code></strong></td>
<td style="text-align: left;">Generate a Neo4j Browser link for a query.</td>
<td style="text-align: left;">"Visualize the class hierarchy of <code>BaseModel</code>."</td>
</tr>
</tbody>
</table>
<hr />
<h2 id="example-queries-cookbook">Example Queries (Cookbook)</h2>
<p>For a deep dive into exactly how to phrase questions and what JSON arguments look like, check out the Cookbook.</p>
<p><a href="../../cookbook/">📖 View the MCP Cookbook</a></p>
</article>
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