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<h1 id="mcpserver">MCPServer</h1>
<p>The <code>MCPServer</code> class is the core of the CodeGraphContext application. It orchestrates all the major components, including database management, background job tracking, file system watching, and tool handling.</p>
<h2 id="initialization">Initialization</h2>
<p>The server is initialized with an asyncio event loop. Upon initialization, it sets up the following components:</p>
<ul>
<li><code>DatabaseManager</code>: Manages the connection to the Neo4j database.</li>
<li><code>JobManager</code>: Tracks the status of background jobs, such as code indexing.</li>
<li><code>CodeWatcher</code>: Monitors the file system for changes to keep the code graph up-to-date.</li>
<li><code>GraphBuilder</code>: Builds the code graph from the source code.</li>
<li><code>CodeFinder</code>: Provides tools for searching and analyzing the code graph.</li>
</ul>
<h2 id="tool-manifest">Tool Manifest</h2>
<p>The <code>MCPServer</code> exposes a set of tools to the AI assistant. These tools are defined in the <code>_init_tools</code> method. Here is a list of available tools:</p>
<h3 id="add_code_to_graph"><code>add_code_to_graph</code></h3>
<p>Performs a one-time scan of a local folder to add its code to the graph. Ideal for indexing libraries, dependencies, or projects not being actively modified. Returns a job ID for background processing.</p>
<h3 id="check_job_status"><code>check_job_status</code></h3>
<p>Check the status and progress of a background job.</p>
<h3 id="list_jobs"><code>list_jobs</code></h3>
<p>List all background jobs and their current status.</p>
<h3 id="find_code"><code>find_code</code></h3>
<p>Find relevant code snippets related to a keyword (e.g., function name, class name, or content).</p>
<h3 id="analyze_code_relationships"><code>analyze_code_relationships</code></h3>
<p>Analyze code relationships like 'who calls this function' or 'class hierarchy'. Supported query types include: find_callers, find_callees, find_all_callers, find_all_callees, find_importers, who_modifies, class_hierarchy, overrides, dead_code, call_chain, module_deps, variable_scope, find_complexity, find_functions_by_argument, find_functions_by_decorator.</p>
<h3 id="watch_directory"><code>watch_directory</code></h3>
<p>Performs an initial scan of a directory and then continuously monitors it for changes, automatically keeping the graph up-to-date. Ideal for projects under active development. Returns a job ID for the initial scan.</p>
<h3 id="execute_cypher_query"><code>execute_cypher_query</code></h3>
<p>This is an advanced tool for directly querying the underlying Neo4j graph using a read-only Cypher query. It should be used as a fallback when other tools cannot answer very specific or complex questions about the code graph.</p>
<p><strong>Schema Overview:</strong></p>
<p>The code graph has the following structure:</p>
<ul>
<li><strong>Nodes:</strong><ul>
<li><code>Repository</code>: Represents a project repository.</li>
<li><code>File</code>: Represents a single source code file.</li>
<li><code>Module</code>: Represents a package or a module.</li>
<li><code>Class</code>: Represents a class definition.</li>
<li><code>Function</code>: Represents a function or method definition.</li>
</ul>
</li>
<li><strong>Properties:</strong><ul>
<li>Nodes have properties like <code>name</code>, <code>path</code>, <code>cyclomatic_complexity</code> (for functions), and <code>code</code>.</li>
</ul>
</li>
<li><strong>Relationships:</strong><ul>
<li><code>CONTAINS</code>: e.g., <code>(:File)-[:CONTAINS]->(:Function)</code></li>
<li><code>CALLS</code>: e.g., <code>(:Function)-[:CALLS]->(:Function)</code></li>
<li><code>IMPORTS</code>: e.g., <code>(:File)-[:IMPORTS]->(:Module)</code></li>
<li><code>INHERITS</code>: e.g., <code>(:Class)-[:INHERITS]->(:Class)</code></li>
</ul>
</li>
</ul>
<h3 id="add_package_to_graph"><code>add_package_to_graph</code></h3>
<p>Add a Python package to Neo4j graph by discovering its location. Returns immediately with job ID.</p>
<h3 id="find_dead_code"><code>find_dead_code</code></h3>
<p>Find potentially unused functions (dead code) across the entire indexed codebase, optionally excluding functions with specific decorators.</p>
<h3 id="calculate_cyclomatic_complexity"><code>calculate_cyclomatic_complexity</code></h3>
<p>Calculate the cyclomatic complexity of a specific function to measure its complexity.</p>
<h3 id="find_most_complex_functions"><code>find_most_complex_functions</code></h3>
<p>Find the most complex functions in the codebase based on cyclomatic complexity.</p>
<h3 id="list_indexed_repositories"><code>list_indexed_repositories</code></h3>
<p>List all indexed repositories.</p>
<h3 id="delete_repository"><code>delete_repository</code></h3>
<p>Delete an indexed repository from the graph.</p>
<h3 id="visualize_graph_query"><code>visualize_graph_query</code></h3>
<p>Generates a URL to visualize the results of a Cypher query in the Neo4j Browser. The user can open this URL in their web browser to see the graph visualization.</p>
<h3 id="list_watched_paths"><code>list_watched_paths</code></h3>
<p>Lists all directories currently being watched for live file changes.</p>
<h3 id="unwatch_directory"><code>unwatch_directory</code></h3>
<p>Stops watching a directory for live file changes.</p>
<h2 id="other-methods">Other Methods</h2>
<ul>
<li><code>get_database_status()</code>: Returns the current connection status of the Neo4j database.</li>
<li><code>get_local_package_path(package_name)</code>: Finds the local installation path of a Python package.</li>
<li><code>run()</code>: Runs the main server loop, listening for JSON-RPC requests from stdin.</li>
<li><code>shutdown()</code>: Gracefully shuts down the server and its components.</li>
</ul>
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