OrigeneMCP

[project] name = "mcp-tools" version = "1.0.0" description = "OriGene mcp tools index" readme = "README.md" requires-python = ">=3.13" dependencies = [ "aiocache>=0.12.3", "aiofiles==24.1.0", "aiohappyeyeballs==2.6.1", "aiohttp==3.12.13", "aiosignal==1.3.2", "anthropic==0.53.0", "anyio==4.9.0", "attrs==25.3.0", "backoff==2.2.1", "bcrypt==4.3.0", "beautifulsoup4==4.13.4", "bio==1.8.0", "biopython==1.85", "biothings-client==0.4.1", "boto3==1.38.34", "botocore==1.38.34", "browser-use==0.2.6", "bs4==0.0.2", "cachetools==5.5.2", "click==8.2.1", "colorlog>=6.9.0", "contourpy==1.3.2", "cycler==0.12.1", "dataclasses-json==0.6.7", "decorator==5.2.1", "deprecated==1.2.18", "duckduckgo-search==8.0.2", "dynaconf==3.2.11", "fabric==3.2.2", "faiss-cpu==1.11.0", "fastapi==0.115.12", "filetype==1.2.0", "fonttools==4.58.2", "frozenlist==1.7.0", "google-ai-generativelanguage==0.6.18", "google-api-core==2.25.0", "google-auth==2.40.3", "googleapis-common-protos==1.70.0", "gprofiler-official==1.0.0", "graphene==3.4.3", "graphql-core==3.2.6", "graphql-relay==3.2.0", "greenlet==3.2.3", "grpcio==1.73.0", "grpcio-status==1.73.0", "gseapy==1.1.9", "h11==0.16.0", "h2==4.2.0", "hpack==4.1.0", "httpcore==1.0.9", "httpx==0.28.1", "httpx-sse==0.4.0", "hyperframe==6.1.0", "invoke==2.2.0", "jiter==0.10.0", "jmespath==1.0.1", "json5==0.12.0", "justext==3.0.2", "kiwisolver==1.4.8", "langchain==0.3.25", "langchain-anthropic==0.3.15", "langchain-aws==0.2.25", "langchain-community==0.3.24", "langchain-core==0.3.64", "langchain-deepseek==0.1.3", "langchain-google-genai==2.1.5", "langchain-mcp-adapters==0.1.7", "langchain-ollama==0.3.3", "langchain-openai==0.3.21", "langchain-tavily==0.2.3", "langchain-text-splitters==0.3.8", "langgraph==0.4.8", "langgraph-checkpoint==2.0.26", "langgraph-prebuilt==0.2.2", "langgraph-sdk==0.1.70", "langsmith==0.3.45", "lxml==5.4.0", "lxml-html-clean==0.4.2", "markdownify==1.1.0", "marshmallow==3.26.1", "matplotlib==3.10.3", "mcp==1.9.3", "mem0ai==0.1.106", "memoization>=0.4.0", "mpmath==1.3.0", "multidict==6.5.0", "mygene==3.2.2", "mypy==1.16.1", "mypy-extensions==1.1.0", "nest-asyncio==1.6.0", "numpy==2.2.6", "ollama==0.5.1", "openai==1.84.0", "orjson==3.10.18", "ormsgpack==1.10.0", "pandas==2.3.0", "paramiko==3.5.1", "patchright==1.52.5", "pathspec==0.12.1", "pillow==11.2.1", "playwright==1.52.0", "pooch==1.8.2", "portalocker==2.10.1", "posthog==4.6.2", "primp==0.15.0", "propcache==0.3.2", "proto-plus==1.26.1", "protobuf==6.31.1", "psutil==7.0.0", "pubchempy==1.0.4", "pyasn1==0.6.1", "pyasn1-modules==0.4.2", "pydantic==2.11.5", "pydantic-core==2.33.2", "pydantic-settings==2.9.1", "pyee==13.0.0", "pynacl==1.5.0", "pyparsing==3.2.3", "pyperclip==1.9.0", "pytest>=8.4.1", "pytest-asyncio>=1.0.0", "python-dateutil==2.9.0.post0", "python-dotenv==1.1.0", "python-multipart==0.0.20", "pytz==2025.2", "pyyaml==6.0.2", "qdrant-client==1.14.2", "regex==2024.11.6", "requests>=2.32.4", "requests-toolbelt==1.0.0", "rsa==4.9.1", "s3transfer==0.13.0", "scipy==1.15.3", "screeninfo==0.8.1", "six==1.17.0", "sniffio==1.3.1", "soupsieve==2.7", "sqlalchemy==2.0.41", "sse-starlette==2.3.6", "starlette==0.46.2", "sympy==1.14.0", "tenacity==9.1.2", "tiktoken==0.9.0", "toml>=0.10.2", "tooluniverse>=0.2.0", "typing-inspect==0.9.0", "typing-inspection==0.4.1", "tzdata==2025.2", "uuid7==0.1.0", "uv==0.7.11", "uvicorn==0.34.3", "wrapt==1.17.2", "xxhash==3.5.0", "yarl==1.20.1", ] [tool.pytest.ini_options] log_cli = true log_cli_level = "INFO" filterwarnings = ["ignore::UserWarning"] [[tool.uv.index]] url = "https://pypi.org/simple" default = true