DollhouseMCP

# Enhanced Index Architecture - FIXED STATE *Updated: September 24, 2025, 3:00 PM* ## Current Working Architecture (After Fixes) ``` ┌─────────────────────────────────────────────────────────────────┐ │ EnhancedIndexManager │ │ (Singleton) │ │ ✅ WORKING: Completes in ~186ms │ │ - File locking works │ │ - Caching functional │ └─────────────────┬──────────────────────────┬────────────────────┘ │ │ ▼ ▼ ┌──────────────────────┐ ┌────────────────────┐ │ IndexConfigManager │ │ FileLock │ │ (Singleton) │ │ (Instance per │ │ │ │ index file) │ │ ✅ Config limits │ │ ✅ Lock works │ │ properly applied │ │ ⚠️ Test conflicts │ └──────────────────────┘ └────────────────────┘ │ ├──────────────┬────────────┬──────────────┐ ▼ ▼ ▼ ▼ ┌──────────────────┐ ┌──────────┐ ┌─────────────┐ ┌──────────────────┐ │ NLPScoringManager│ │ VerbTrigger│ │Relationship│ │PortfolioIndexMgr│ │ (Instance) │ │ Manager │ │ Manager │ │ (Singleton) │ │ │ │(Singleton) │ │(Singleton) │ │ │ │ ✅ LRU cache OK │ │ │ │ │ │ ✅ Scans files │ │ ✅ Scoring fast │ │ ✅ FIXED! │ │ ✅ Pattern │ │ ⚠️ Security │ │ ✅ 500 limit OK │ │ Now passes │ │ works │ │ false +ves │ └──────────────────┘ │ index │ └────────────┘ └──────────┬───────┘ └─────┬──────┘ │ │ ▼ ✅ NO CIRCULAR! ┌──────────────────┐ Receives index │ PortfolioManager │ as parameter │ (Singleton) │ │ │ │ ✅ Scans dirs OK │ └──────────────────┘ ``` ## Fixed Data Flow (Working Pipeline) ``` 1. INDEX BUILD REQUEST │ ▼ 2. FILE LOCK ACQUISITION ✅ ├─> Timeout: 60s └─> Stale detection works │ ▼ 3. PORTFOLIO SCANNING ✅ │ ├─> Successfully reads 186 files │ ├─> personas: ✅ │ ├─> skills: ⚠️ (some blocked by security) │ ├─> templates: ⚠️ (some blocked) │ ├─> agents: ✅ │ ├─> memories: ✅ │ └─> ensembles: ✅ │ ▼ 4. METADATA EXTRACTION ⚠️ PARTIAL ISSUE │ ├─> SecureYamlParser.parse() │ ├─> Size validation ✅ │ ├─> YAML bomb detection ✅ │ ├─> Unicode normalization ✅ │ ├─> Pattern matching ❌ FALSE POSITIVES │ │ └─> Blocks: "audit", "security", "scan" skills │ └─> Field validation ✅ │ ▼ 5. ELEMENT DEFINITION BUILDING ✅ │ ├─> Core metadata ✅ ├─> Search data ✅ ├─> Verb triggers ✅ (2 found) └─> Initial relationships ✅ │ ▼ 6. SEMANTIC RELATIONSHIP CALCULATION ✅ FIXED! │ ├─> Text preparation ✅ ├─> Entropy calculation ✅ ├─> Similarity matrix: │ │ │ ├─> IF elements <= 50 THEN ✅ │ │ └─> Full matrix (max 1,225 comparisons) │ │ - Currently: ~190 comparisons │ │ - Time: ~50ms │ │ │ └─> IF elements > 50 THEN ✅ │ └─> LIMITED sampling (max 500) │ ├─> Keyword clustering (300 comparisons) │ └─> Cross-type sampling (200 comparisons) │ - Time: ~150ms │ ▼ 7. RELATIONSHIP DISCOVERY ✅ FIXED! │ ├─> Pattern-based ✅ (regex matching) ├─> Verb-based ✅ (fixed circular dep!) │ └─> Now receives index as parameter └─> Inverse relationships ✅ │ ▼ 8. INDEX PERSISTENCE ✅ │ └─> Saves to ~/.dollhouse/portfolio/capability-index.yaml - File size: ~200KB - 596 relationships stored ``` ## Performance Metrics (Current State) ``` ╔════════════════════════╦═════════╦═══════════════════════════╗ ║ Operation ║ Time ║ Status ║ ╠════════════════════════╬═════════╬═══════════════════════════╣ ║ Total Build ║ 186ms ║ ✅ Excellent ║ ║ Portfolio Scan ║ 50ms ║ ✅ Fast ║ ║ Metadata Extract ║ 40ms ║ ⚠️ Some files blocked ║ ║ NLP Scoring ║ 80ms ║ ✅ Optimized ║ ║ Relationship Discovery ║ 10ms ║ ✅ Fixed ║ ║ Save to Disk ║ 6ms ║ ✅ Fast ║ ╚════════════════════════╩═════════╩═══════════════════════════╝ Elements: 186 | Relationships: 596 | Triggers: 2 ``` ## What's Still Broken / Not Done ### 🔴 CRITICAL - Blocking Production #### 1. **NOT INTEGRATED INTO MAIN APP** ``` src/index.ts │ ├─> ❌ Does NOT import EnhancedIndexManager ├─> ❌ No tools use relationships └─> ❌ No verb trigger support NEEDED: │ ├─> Import and initialize EnhancedIndexManager ├─> Add to portfolio_search tool ├─> Create new MCP tools: │ ├─> find_similar_elements │ ├─> get_element_relationships │ └─> search_by_verb └─> Add relationship info to responses ``` ### 🟡 MEDIUM - Quality Issues #### 2. **Security Validation False Positives** ``` PROBLEM: Legitimate security skills are blocked FILES AFFECTED: - comprehensive-security-auditor.md ❌ - content-safety-validator.md ❌ - encoding-pattern-detection.md ❌ - security-validation-system-summary.md ❌ - penetration-test-report.md ❌ CAUSE: ContentValidator patterns too aggressive PATTERN: /audit|security|scan/ matching in descriptions FIX NEEDED: - Refine patterns to be more specific - Whitelist security-related skills - Or disable validation for portfolio files ``` #### 3. **Test Suite Still Disabled** ``` test/__tests__/unit/portfolio/EnhancedIndexManager.test.ts └─> describe.skip() - Tests still skipped test/__tests__/unit/portfolio/VerbTriggerManager.test.ts └─> describe.skip() - Tests still skipped ISSUES: - File lock conflicts in test environment - Mock strategy needed for isolation - Tests timeout even with fixes ``` ### 🟢 MINOR - Enhancements #### 4. **No Persistent Cache** ``` CURRENT: Rebuilds index every restart NEEDED: Cache index between runs - Check file mtimes for changes - Only reindex modified files - Store cache in ~/.dollhouse/cache/ ``` #### 5. **Limited Verb Triggers** ``` CURRENT: Only 2 triggers found EXPECTED: Should find 50+ based on element names ISSUE: Verb extraction too conservative ``` ## Implementation Plan ### Phase 1: Fix Blockers (Current Session) ``` [✅] Fix circular dependency [✅] Increase comparison limits [✅] Document architecture [⬜] Fix security validation [⬜] Re-enable tests ``` ### Phase 2: Integration (Next Session) ``` [⬜] Add to src/index.ts initialization [⬜] Create find_similar_elements tool [⬜] Create get_element_relationships tool [⬜] Add relationships to portfolio_search [⬜] Enable verb-based discovery in activate_element ``` ### Phase 3: Optimization ``` [⬜] Implement persistent cache [⬜] Add incremental indexing [⬜] Use worker threads for NLP [⬜] Add progress reporting ``` ### Phase 4: Enhancement ``` [⬜] More relationship types [⬜] Element composition [⬜] Dependency tracking [⬜] Cross-element validation ``` ## Code Changes Needed ### 1. Fix Security Validation ```typescript // src/security/contentValidator.ts // Change overly broad patterns: - /audit/ // Matches "audit" anywhere + /\baudit\s*\(/ // Only matches audit() function calls - /security/ // Too broad + /security\s*\.\s*\w+/ // Only security.method patterns ``` ### 2. Integrate into Main App ```typescript // src/index.ts import { EnhancedIndexManager } from './portfolio/EnhancedIndexManager.js'; // In initialization: const enhancedIndex = EnhancedIndexManager.getInstance(); // In portfolio_search tool: const relationships = await enhancedIndex.getRelationships(elementName); // New tool: server.setRequestHandler(ListToolsRequestSchema, async () => ({ tools: [ // ... existing tools { name: 'find_similar_elements', description: 'Find elements similar to a given element', inputSchema: { type: 'object', properties: { element_name: { type: 'string' }, limit: { type: 'number', default: 5 } } } } ] })); ``` ### 3. Enable Tests ```typescript // test/__tests__/unit/portfolio/EnhancedIndexManager.test.ts describe('EnhancedIndexManager - Extensibility Tests', () => { // Remove skip // Add proper mocks for file system // Mock the index file to avoid building }); ``` ## Success Metrics ### Current State ✅ - Build time: 186ms ✅ - Elements indexed: 186 ✅ - Relationships: 596 ✅ - Memory usage: ~50MB ✅ ### Target State - Build time: <200ms ✅ - Elements indexed: 200+ ⬜ - Relationships: 1000+ ⬜ - Verb triggers: 50+ ⬜ - Test coverage: >96% ⬜ - Production integrated ⬜ ## Summary The Enhanced Index is **90% working** but **0% integrated**. The core functionality is stable and performant, but it needs: 1. **Security validation fix** (blocking some files) 2. **Production integration** (not used anywhere) 3. **Test suite enablement** (still skipped) With these three fixes, the feature will be fully production-ready and add significant value through semantic relationships and verb-based discovery. --- *Architecture Status: Core Fixed, Integration Pending* *Next Action: Fix security validation, then integrate into main app*