gRNAde MCP Server

# Core dependencies for gRNAde MCP fastmcp>=0.2.0 loguru # gRNAde core dependencies torch==2.1.0 torchvision==0.16.0 torchaudio==2.1.0 torch-geometric torch-scatter torch-sparse torch-cluster # Scientific computing and ML numpy pandas scipy matplotlib seaborn scikit-learn # Bioinformatics biopython biotite mdanalysis # Configuration and utilities pyyaml python-dotenv tqdm wandb gdown # Additional tools cpdb-protein torchmetrics einops ml_collections ipdb draw_rna arnie # Development and testing (optional) pytest jupyter jupyterlab