gRNAde MCP Server

{ "test_date": "2025-12-24T20:37:43.144024", "server_name": "geometric-rna-design", "environment": { "python_version": "3.12.12", "claude_cli_available": true, "current_directory": "/home/xux/Desktop/NucleicMCP/NucleicMCP/tool-mcps/grnade_mcp", "test_runner_path": "/home/xux/Desktop/NucleicMCP/NucleicMCP/tool-mcps/grnade_mcp/tests/run_integration_tests.py" }, "tests": { "server_startup": { "status": "passed", "details": { "syntax_check": true, "import_check": true, "tools_accessible": true }, "outputs": { "syntax": { "returncode": 0, "stdout": "", "stderr": "", "success": true }, "import": { "returncode": 0, "stdout": "Import successful", "stderr": "", "success": true }, "tools": { "returncode": 0, "stdout": "Tools found", "stderr": "", "success": true } } }, "claude_registration": { "status": "passed", "details": { "server_found": true, "server_connected": true, "full_output": "Checking MCP server health...\n\nlinearfold_mcp: python /home/xux/Desktop/NucleicMCP/NucleicMCP/tool-mcps/linearfold_mcp/src/linearfold_mcp.py - \u2717 Failed to connect\nevo2: /home/xux/miniforge3/envs/nucleic-mcp/bin/python /home/xux/Desktop/NucleicMCP/NucleicMCP/tool-mcps/evo2_mcp/src/server.py - \u2713 Connected\nDNABERT: /home/xux/Desktop/NucleicMCP/NucleicMCP/tool-mcps/dnabert_mcp/env/bin/python /home/xux/Desktop/NucleicMCP/NucleicMCP/tool-mcps/dnabert_mcp/src/server.py - \u2713 Connected\nDNABERT_2: /home/xux/miniforge3/envs/nucleic-mcp/bin/python /home/xux/Desktop/NucleicMCP/NucleicMCP/tool-mcps/dnabert2_mcp/src/server.py - \u2713 Connected\nnucleotide-transformer: /home/xux/miniforge3/envs/nucleic-mcp/bin/python /home/xux/Desktop/NucleicMCP/NucleicMCP/tool-mcps/nucleotide_transformer_mcp/src/server.py - \u2713 Connected\nRNA-FM: /home/xux/Desktop/NucleicMCP/NucleicMCP/tool-mcps/rnafm_mcp/env/bin/python /home/xux/Desktop/NucleicMCP/NucleicMCP/tool-mcps/rnafm_mcp/src/server.py - \u2713 Connected\nRiNALMo: /home/xux/Desktop/NucleicMCP/NucleicMCP/tool-mcps/rinalmo_mcp/env/bin/python /home/xux/Desktop/NucleicMCP/NucleicMCP/tool-mcps/rinalmo_mcp/src/server.py - \u2713 Connected\nLinearDesign: /home/xux/miniforge3/envs/nucleic-mcp/bin/python /home/xux/Desktop/NucleicMCP/NucleicMCP/tool-mcps/lineardesign_mcp/src/server.py - \u2713 Connected\nViennaRNA: /home/xux/Desktop/NucleicMCP/NucleicMCP/tool-mcps/viennarna_mcp/env/bin/python /home/xux/Desktop/NucleicMCP/NucleicMCP/tool-mcps/viennarna_mcp/src/server.py - \u2713 Connected\nRhoFold: /home/xux/miniforge3/envs/nucleic-mcp/bin/python /home/xux/Desktop/NucleicMCP/NucleicMCP/tool-mcps/rhofold_mcp/src/server.py - \u2713 Connected\nDRfold2: /home/xux/Desktop/NucleicMCP/NucleicMCP/tool-mcps/drfold2_mcp/env/bin/python3.11 /home/xux/Desktop/NucleicMCP/NucleicMCP/tool-mcps/drfold2_mcp/src/server.py - \u2713 Connected\nSHAPEwarp: /home/xux/Desktop/NucleicMCP/NucleicMCP/tool-mcps/shapewarp_mcp/env/bin/python /home/xux/Desktop/NucleicMCP/NucleicMCP/tool-mcps/shapewarp_mcp/src/server.py - \u2713 Connected\nrnamotif: /home/xux/Desktop/NucleicMCP/NucleicMCP/tool-mcps/rnamotif_mcp/env/bin/python /home/xux/Desktop/NucleicMCP/NucleicMCP/tool-mcps/rnamotif_mcp/src/server.py - \u2713 Connected\nFOREST2020: /home/xux/miniforge3/envs/nucleic-mcp/bin/python /home/xux/Desktop/NucleicMCP/NucleicMCP/tool-mcps/forest_mcp/src/server.py - \u2713 Connected\nRhoDesign: /home/xux/Desktop/NucleicMCP/NucleicMCP/tool-mcps/rhodesign_mcp/env/bin/python /home/xux/Desktop/NucleicMCP/NucleicMCP/tool-mcps/rhodesign_mcp/src/server.py - \u2713 Connected\ngeometric-rna-design: python /home/xux/Desktop/NucleicMCP/NucleicMCP/tool-mcps/grnade_mcp/src/server.py - \u2713 Connected" } }, "example_data": { "status": "passed", "files_checked": 4, "files_found": 4, "details": { "examples/data/structures/8t2p_A.pdb": { "exists": true, "size": 368631 }, "examples/data/sequences/sample_designs.csv": { "exists": true, "size": 19680 }, "examples/data/configs/design.yaml": { "exists": true, "size": 4268 }, "examples/data/structures/RFdiff_0.pdb": { "exists": true, "size": 210417 } } }, "job_directory": { "status": "passed", "details": { "exists": true, "is_directory": true, "writable": 128, "path": "/home/xux/Desktop/NucleicMCP/NucleicMCP/tool-mcps/grnade_mcp/jobs" } }, "python_tools": { "status": "passed", "output": "SUCCESS: Server imported successfully\nServer type: <class 'fastmcp.server.server.FastMCP'>", "error": null } }, "issues": [], "summary": { "total_tests": 5, "passed": 5, "failed": 0, "pass_rate": "100.0%", "test_duration_seconds": 21.653832, "issues_found": 0, "ready_for_production": true } }