"""
PubChem MCP server compounds module - handles compound structure, property and information functions.
"""
from mcp_server import FastMCP
# Import all tool modules with explicit assignment to keep them in scope
from . import structures
from . import properties
def register_compound_tools(mcp: FastMCP):
"""Register all compound tools with the MCP server"""
# Inject the MCP instance into each module
structures.mcp = mcp
properties.mcp = mcp
# Load modules (which will register their tools via the decorator)
return {
"structures": structures,
"properties": properties
}
from ..utils import pubchem_client, BASE_URL, PROPERTY_MAP
import urllib.parse
from typing import Dict, Any, Optional
import httpx
# Import tool functions from submodules
from .search import (
search_compound_by_name,
search_compound_by_smiles,
search_compound_by_inchi,
search_compound
)
from .details import (
get_compound_details,
get_compound_sdf,
get_compound_smiles,
get_compound_inchi,
get_compound_mol,
get_compound_image_url,
get_compound_3d_coordinates,
get_compound_conformers
)
from .properties import (
get_compound_toxicity,
get_compound_drug_interactions,
get_compound_vendors
)
from .classifications import (
get_compound_classification,
get_compound_pharmacology,
get_compound_targets
)
from .references import (
get_compound_literature,
get_compound_patents,
get_compound_xrefs,
get_compound_synonyms
)
# Re-export all functions
__all__ = [
# Search functions
'search_compound_by_name',
'search_compound_by_smiles',
'search_compound_by_inchi',
'search_compound',
# Details functions
'get_compound_details',
'get_compound_sdf',
'get_compound_smiles',
'get_compound_inchi',
'get_compound_mol',
'get_compound_image_url',
'get_compound_3d_coordinates',
'get_compound_conformers',
# Properties functions
'get_compound_toxicity',
'get_compound_drug_interactions',
'get_compound_vendors',
# Classification functions
'get_compound_classification',
'get_compound_pharmacology',
'get_compound_targets',
# References functions
'get_compound_literature',
'get_compound_patents',
'get_compound_xrefs',
'get_compound_synonyms',
]
