Server Configuration
Describes the environment variables required to run the server.
| Name | Required | Description | Default |
|---|---|---|---|
| CEDAR_API_KEY | Yes | Your CEDAR API key from cedar.metadatacenter.org | |
| BIOPORTAL_API_KEY | Yes | Your BioPortal API key from bioportal.bioontology.org |
Schema
Prompts
Interactive templates invoked by user choice
| Name | Description |
|---|---|
No prompts | |
Resources
Contextual data attached and managed by the client
| Name | Description |
|---|---|
No resources | |
Tools
Functions exposed to the LLM to take actions
| Name | Description |
|---|---|
| get_template | Get a template from the CEDAR repository. Args: template_id: The template ID or full URL from CEDAR repository (e.g., "https://repo.metadatacenter.org/templates/e019284e-48d1-4494-bc83-ddefd28dfbac") Returns: Template data from CEDAR, cleaned and transformed |
| get_instances_based_on_template | Get template instances that belong to the input template ID with pagination support. This tool searches for instances of a given template and fetches their complete content in paginated chunks to avoid token limit issues. Args: template_id: The template ID or full URL from CEDAR repository (e.g., "https://repo.metadatacenter.org/templates/e019284e-48d1-4494-bc83-ddefd28dfbac") limit: Number of instances to return per page (min: 1, max: 100, default: 10) offset: Starting position for pagination (default: 0) Returns: Dictionary containing: - instances: List of template instances for this page - pagination: Pagination metadata (total_count, current_page, etc.) - errors: List of any errors encountered during fetching |