"Tools or methods for organizing Org files and Org-roam nodes based on content" matching MCP connectors:
GET /v1/connectors — MCP directory API referenceMatching Connector Tools:
Helena Bioinformatics MCP for clinical variant interpretation, ACMG/AMP evidence and literature.
Deterministic peptide reconstitution and dosing math, so assistants compute it instead of guessing.
PK serum simulation, reconstitution math and compound data for agents. Paid tools $0.01 via x402.
Look up allele frequencies by ancestry, gene constraint, variants, and coverage over gnomAD.
Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.
Search biomedical papers, inspect publication records, and traverse citation or semantic graphs.
Search GBIF species taxonomy, occurrence records, datasets, and publishers.
Look up genes, sequences, variants, homologs, and cross-database xrefs from Ensembl REST.
Official answers about Helena Bioinformatics and its products, with citations to public sources.
Search and resolve Naturepedia, Robbie's Razor, and GC-MRD-v2.0 canonical resources.
Query STRING interactions, enrichment, annotations, homology, and PPI networks.
Canine genomics for agents: breed allele frequencies, AI pathogenicity + OMIA clinical disease layer
Biotech rNPV/PoS engine for AI agents. Signed exports, evidence register, asset landscape.
Hosted DNA/RNA/protein tools: primers, oligos, PCR, cloning, CRISPR, alignment, batch & pipelines.
Biotech intelligence for AI agents: drugs, targets, diagnostics, PoS estimates, and writeups.
A unified biomedical graph database that integrates 50+ primary data sources — genes, proteins, compounds, diseases, pathways, and clinical data — into a single queryable graph with billions of cross-reference edges. Its native MCP server gives LLMs direct access to structured, authoritative biomedical data, complementing their reasoning with reliable identifiers and up-to-date database content.
Biomedical data: compounds, drug info, and molecular targets
KEGG REST MCP — Kyoto Encyclopedia of Genes and Genomes.
Chemical molecular intelligence platform covering compound search, structure analysis, physicochemical property retrieval, and molecular interaction profiling.
PatSnap Biology Modality MCP server — access biological sequences, modification records, and antibody-antigen interactions across 200M+ patents.
