"Methods to Extract Data from Files" matching MCP connectors:

Official answers about Helena Bioinformatics and its products, with citations to public sources.

Ancestry allele frequencies, LoF constraint, variant lists, and coverage from gnomAD, with ClinVar.

Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.

Look up genes, sequences, variants, homologs, and cross-database xrefs from Ensembl REST.

Biomedical data: compounds, drug info, and molecular targets

PK serum simulation, reconstitution math and compound data for agents. Paid tools $0.01 via x402.

BioBTreeA

bio.sugi

A unified biomedical graph database that integrates 50+ primary data sources — genes, proteins, compounds, diseases, pathways, and clinical data — into a single queryable graph with billions of cross-reference edges. Its native MCP server gives LLMs direct access to structured, authoritative biomedical data, complementing their reasoning with reliable identifiers and up-to-date database content.

BOLD Systems (Barcode of Life Data System, University of Guelph) — the global DNA barcode…

NCI Genomic Data Commons (GDC) MCP.

EBI PRIDE Archive MCP — proteomics (mass-spectrometry) data repository. Keyless. Wraps the public…

Gene expression experiments and the brain structure ontology from the Allen Institute's Brain…

dbSNP refSNP records and HGVS/SPDI/rsID normalization for human genetic variants, from NCBI…

PDBe (Protein Data Bank in Europe, EBI) MCP.

Educational insights from your lab results, DNA files and wearable data. EU-hosted, GDPR-first.

Auditable multi-agent topology generator from Drosophila MaleCNS connectome motifs.

Serves the user's personal DNA wellness report to their AI: caffeine response, sleep timing, training, nutrient absorption. Built from a hand-checked evidence base (GWAS Catalog, PharmGKB); every finding states its effect size and links to its source paper. No disease risk scores. The raw DNA file is parsed in the user's browser and never uploaded.

mcpOAuth unavailable

com.gencove.consumer

Gencove consumer genomics: profile, kit status, ancestry, PRS, raw data. Requires Gencove auth.