"MCP server for real-time console interaction and log monitoring in Cursor IDE" matching MCP connectors:
Matching Connector Tools:
Helena Bioinformatics MCP for clinical variant interpretation, ACMG/AMP evidence and literature.
Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.
Search GBIF species taxonomy, occurrence records, datasets, and publishers.
Protein research over UniProtKB — search by function, fetch curated records, map IDs, proteomes.
Look up genes, sequences, variants, homologs, and cross-database xrefs from Ensembl REST.
Look up allele frequencies by ancestry, gene constraint, variants, and coverage over gnomAD.
Query STRING interactions, enrichment, annotations, homology, and PPI networks.
Search and resolve Naturepedia, Robbie's Razor, and GC-MRD-v2.0 canonical resources.
Query CAN-IMMUNE: cancer neoantigen mutations, peptides, cell lines, MHC-I binding. Read-only.
Official answers about Helena Bioinformatics and its products, with citations to public sources.
EBI PRIDE Archive MCP — proteomics (mass-spectrometry) data repository.
InterPro MCP (EBI) — protein family / domain / functional-site classification.
PomBase MCP — the fission yeast (Schizosaccharomyces pombe) model-organism database.
RCSB PDB MCP — experimentally determined macromolecular structures.
Monarch biomedical knowledge graph — diseases, phenotypes, genes, variants
UniProt MCP — protein sequence + function database.
Bioregistry — meta-registry of biomedical identifier prefixes