convert_variant
Read-onlyIdempotent
Convert a variant written in any notation into normalized hg38 genomic coordinates.
Use when you only need the chr/pos/ref/alt of a variant (for example to translate HGVS or an rsID), without annotation. Does not classify the variant; use annotate_variant for that.
Input Schema
TableJSON Schema
| Name | Required | Description | Default |
|---|---|---|---|
| variant | Yes | HGVS (NM_007294.4:c.3756_3759del), rsID (rs429358), SPDI (NC_000007.14:11324573:C:T), 'chr-pos-ref-alt', or 'GENE p.Thr1700Ile'. | |
| input_genome | No | Genome build of positional input (hg19 input is lifted to hg38). | hg38 |
Output Schema
TableJSON Schema
| Name | Required | Description | Default |
|---|---|---|---|
| error | No | ||
| input | Yes | ||
| variants | Yes | Resolved hg38 coordinates (usually exactly one) |