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Glama

Pombase

by io.github.pipeworx-io

Search Within a Source

search_within
Read-onlyIdempotent

Semantic search INSIDE a fetched record. Pass the text you already pulled (e.g. a SEC 10-K body, an article, a long tool result) plus a natural-language query; get back the top-N passages with character offsets and similarity scores. Use when the record is too big to cram into the prompt — search_within saves context, returns only the passages that matter, and every passage carries an offset so the agent can verify a verbatim quote. Pairs with ask_pipeworx_grounded: fetch with the gateway, ground over the relevant passages instead of the whole document. BGE-base-en embeddings + cosine over 500-char overlapping windows; cap is 200K chars (longer inputs are truncated and flagged).

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
textYesThe document text to search inside (max ~200K chars).
limitNoMax passages to return (1-20, default 5).
queryYesNatural-language query — what passages do you want? E.g. "supply-chain risk", "fiscal year 2024 revenue", "drug interactions with warfarin".

Schema Changelog

Changes observed during successful MCP inspections. Dates show when Glama detected each change.

  1. First observed

TDQS

A4.7/5.0
Behavior5/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already declare readOnlyHint, openWorldHint, idempotentHint, destructiveHint=false. Description adds technical details (BGE-base-en embeddings, cosine, 500-char windows, 200K char cap with truncation flag) and explains output characteristics (character offsets, similarity scores). No contradiction.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Every sentence provides essential information: purpose, usage context, technical details, and constraints. No redundant text. Well-structured with key info upfront.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Despite no output schema, the description explains return values (passages, offsets, scores). Covers input limits, pairing advice, and technical mechanism. Complete for effective use.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 100% with descriptions for all parameters. The description adds usage context: explains 'query' with examples, states default for 'limit', and clarifies character cap for 'text'. Adds meaningful value beyond schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states 'Semantic search INSIDE a fetched record', uses specific verb-resource pairing, and distinguishes from siblings by mentioning pairing with ask_pipeworx_grounded for grounding over passages.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Describes when to use: 'when the record is too big to cram into the prompt'. Implicitly suggests not using when the record fits easily. Pairs with ask_pipeworx_grounded as an alternative workflow, but lacks explicit exclusions.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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TDQS

A3.8/5.0
Disambiguation2/5

Several tools have heavily overlapping purposes, notably ask_pipeworx vs ask_pipeworx_beta vs ask_pipeworx_grounded, and the cluster of polymarket tools covers adjacent prediction-market analysis territory. The PomBase-specific tools are distinct, but the overall set creates real selection ambiguity.

Naming Consistency3/5

Most names follow a readable snake_case style and many use verb-first patterns, but there is notable mixing: ask_pipeworx is a brand-style exception, entity_profile and polymarket_arbitrage are noun-first, and remember/recall/forget form an inconsistent trio. Not chaotic, but not a clean predictable convention.

Tool Count2/5

33 tools is excessive for a server named Pombase, where only get_gene and get_reference actually serve that domain. Even as a broad data-research server, the count is above the 25-tool threshold and includes many auxiliary utilities that feel bolted on rather than part of a focused surface.

Completeness2/5

The PomBase-specific coverage is severely thin: only systematic-ID gene lookup and PubMed-ID reference lookup, with no gene-name search, annotations browsing, phenotype data, or sequence access. The broader Pipeworx surface is extensive, but for the apparent Pombase purpose, agents will frequently hit dead ends.

Resources