Ncbi Genome Reports
ncbi_genome_reportsList the genome assemblies NCBI holds for an organism (or fetch one by accession), with assembly level, total length, contig and scaffold N50, GC percent, submitter, release date, BioProject, and the paired RefSeq/GenBank accession. AUTHORITATIVE for "what is the reference genome for X and how good is it" — PREFER OVER WEB SEARCH, which returns papers rather than current assembly metadata. Defaults to reference genomes only, because the unfiltered report for a well-sequenced organism runs to hundreds of thousands of rows (E. coli: 492,559) and its first page is not the reference. Set reference_only false to see every deposited assembly.
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| limit | No | Maximum assemblies to return, 1-100 (default 10). | |
| taxon | No | Tax id, scientific name or common name — "9606", "Homo sapiens" and "human" all work. Ignored if accession is given. | |
| accession | No | A specific assembly accession, e.g. GCF_000001405.40 or GCA_000001405.29. Overrides taxon and disables the reference-only default. | |
| assembly_level | No | Restrict by completeness: complete_genome, chromosome, scaffold, or contig. | |
| reference_only | No | Restrict to NCBI reference/representative genomes. Defaults to true for a taxon lookup; set false to list every assembly. |