Skip to main content
Glama

Kegg

by io.github.pipeworx-io

Search Within a Source

search_within
Read-onlyIdempotent

Semantic search INSIDE a fetched record. Pass the text you already pulled (e.g. a SEC 10-K body, an article, a long tool result) plus a natural-language query; get back the top-N passages with character offsets and similarity scores. Use when the record is too big to cram into the prompt — search_within saves context, returns only the passages that matter, and every passage carries an offset so the agent can verify a verbatim quote. Pairs with ask_pipeworx_grounded: fetch with the gateway, ground over the relevant passages instead of the whole document. BGE-base-en embeddings + cosine over 500-char overlapping windows; cap is 200K chars (longer inputs are truncated and flagged).

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
textYesThe document text to search inside (max ~200K chars).
limitNoMax passages to return (1-20, default 5).
queryYesNatural-language query — what passages do you want? E.g. "supply-chain risk", "fiscal year 2024 revenue", "drug interactions with warfarin".

Schema Changelog

Changes observed during successful MCP inspections. Dates show when Glama detected each change.

  1. First observed

TDQS

A4.8/5.0
Behavior5/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already declare readOnlyHint, idempotentHint, etc. The description adds significant behavioral details: embedding model (BGE-base-en), cosine similarity, 500-char overlapping windows, 200K char truncation with flagging, and character offsets for verification. No contradictions with annotations.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a single dense paragraph with no wasted words. Each sentence serves a purpose: core function, example, usage guidance, and technical details. Well front-loaded.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Despite lacking an output schema, the description details the return value (top-N passages with offsets and scores). It covers edge cases (truncation), tool model details, and integration with siblings. Complete for a medium-complexity tool.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 100% with three parameters described. The description goes further: explains text max size and truncation, limit default and range (1-20), and provides query examples. This adds meaning beyond the schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool performs semantic search inside a fetched record, using input text and natural-language query. It distinguishes from sibling tools like ask_pipeworx_grounded and find by specifying it operates on already-retrieved content, returning passages with offsets and scores. The verb 'search within' plus resource is precise.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explicitly recommends using the tool when records are too large for prompts and pairs it with ask_pipeworx_grounded for grounding. While it does not list exclusions or alternatives beyond that, the usage context is clearly stated.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

All Kegg toolsInspect
Try in Browser
RayrunBuild, deploy, and operate MCP servers without becoming an infrastructure team.ray.runAd

Glama MCP Gateway

Add one secure layer between your agents and this server.

TDQS

A3.8/5.0
Disambiguation3/5

Most tools have clearly described distinct purposes, but several overlap: ask_pipeworx and ask_pipeworx_beta are explicitly identical right now, and ask_pipeworx_grounded, deep_research, discover_tools, and suggest_questions all occupy neighboring query/discovery territory. The Polymarket and memory tool families, by contrast, are well differentiated.

Naming Consistency3/5

All names are snake_case and readable, but the set mixes verb-first names (ask_pipeworx, compare_entities, resolve_entity, validate_claim) with noun-phrase names (entity_profile, bet_research, recent_alerts, polymarket_arbitrage) and brand prefixes (pipeworx_*, polymarket_*). There is no consistent verb_noun pattern across the toolkit.

Tool Count2/5

34 tools is well beyond the heavy range, and the count is especially inappropriate because the server is named Kegg but only find, get_entry, and list_database relate to KEGG bioinformatics. The remaining 31 tools span unrelated domains (generic data research, prediction markets, memory, subscriptions, AI visibility, npm scanning), making the scope feel like several products merged into one.

Completeness2/5

As a KEGG server, the surface is severely thin: three read-only tools with no pathway mapping, sequence search, or cross-reference utilities. The Pipeworx research and Polymarket betting subsystems are more complete, but their presence under a Kegg server makes the overall surface incoherent rather than complete.

Resources