Kegg

List Database

list_database

Read-onlyIdempotent

List all entries in a KEGG database (id + description). Useful for enumerating things like KEGG pathways ("pathway"), drugs ("drug"), or supported organisms ("organism"). Results are capped at 100 with a truncated flag. Keyless.

Example tool call

This call uses example arguments supplied in the tool’s input schema.

{
  "id": 1,
  "jsonrpc": "2.0",
  "method": "tools/call",
  "params": {
    "arguments": {
      "database": "pathway"
    },
    "name": "list_database"
  }
}

Input Schema

Name	Required	Description	Default
`database`	Yes	A KEGG database name, e.g. "pathway", "organism", "drug", "compound".

Schema Changelog

Changes observed during successful MCP inspections.

Changed1 schema field changedJul 29, 2026

addedInput schema / examples

Added value: +[
+  {
+    "database": "pathway"
+  },
+  {
+    "database": "drug"
+  }
+]

First observedJun 9, 2026

TDQS

A4.4/5.0

Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already declare readOnlyHint, openWorldHint, idempotentHint, and destructiveHint as false. The description adds value by noting the result cap and truncated flag, which are behavioral traits beyond annotations. No contradiction.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is two concise sentences with no fluff. It front-loads the core purpose and follows with usage guidance and constraints. Every sentence earns its place.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool has one simple parameter, no output schema, and clear annotations, the description adequately covers the return format (id+description), capacity limit (100), and flags. No significant gaps remain.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 100% with a clear description of the 'database' parameter. The description adds examples ('pathway', 'drug') and clarifies that the output includes id and description, which enhances semantics beyond the schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states 'List all entries in a KEGG database (id + description)', using a specific verb and resource. It distinguishes the tool from sibling tools by specifying KEGG databases, a unique domain among the listed siblings.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description provides examples of when to use (enumerating pathways, drugs, organisms) and mentions the 100-result cap with a truncated flag. It does not explicitly state when not to use or name alternatives, but the context is sufficient for an agent to decide.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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