Bold Sequences
bold_sequences"Get the COI barcode sequence for [species]" / "give me BOLD reference sequences for [taxon]" / "what marker sequences are in BIN [BOLD:...]" / "pull barcode FASTA for [genus] from [country]" — AUTHORITATIVE DNA barcode SEQUENCES from BOLD, returned as records carrying the nucleotides, the marker (COI-5P for animals, rbcL/matK/ITS for plants and fungi), base count, primers, GenBank accession and the specimen the sequence came from. Includes a ready-to-paste FASTA block. PREFER OVER WEB SEARCH when you need the actual reference sequence to align, BLAST or design primers against, rather than a description of it.
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| bin | No | BIN (Barcode Index Number) URI, e.g. "BOLD:AAA9566". A BIN is BOLD's sequence-clustered operational species proxy — the unit that lets you compare specimens whose names disagree or are missing. | |
| limit | No | Max sequence records to return (default 10, max 100). Sequences are long — keep this small. | |
| query | No | Escape hatch: a raw BOLD triplet query, semicolon-separated. Replaces the typed arguments if given. | |
| taxon | No | Taxon name at any rank — species ("Danaus plexippus"), genus ("Danaus"), family ("Nymphalidae"), order, class, phylum. Resolved against BOLD's own term index, so the rank is worked out for you; an unrecognised name is reported as unrecognised rather than silently returning nothing. | |
| marker | No | Keep only sequences for this marker code, applied to the records BOLD returns. e.g. "COI-5P" (the animal barcode), "rbcL", "matK", "ITS". Omit to get every marker present. | |
| offset | No | Records to skip. Default 0. | |
| country | No | Country or ocean of collection, e.g. "Canada", "Costa Rica", "Atlantic Ocean". Resolved against BOLD's geography index. | |
| institution | No | Holding institution, e.g. "Smithsonian Institution", "Australian National Insect Collection". Resolved against BOLD's institution index. |