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Uniprot

uniprot
Read-onlyIdempotent

Fetch AlphaFold structure prediction metadata (PDB/CIF/PAE download URLs, pLDDT scores) by UniProt accession (e.g. "P00533"); equivalent to prediction but takes uniprot_id explicitly.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
uniprot_idYes

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
plddtNoMean predicted local distance difference test score
entryIdNoAlphaFold entry identifier
mgnifyIdNoMGnify identifier
organismNoOrganism name
sequenceNoAmino acid sequence
uniprotIdNoUniProt ID
structuresNoAvailable structure files
discoveredDateNoISO date when structure was discovered
sequenceLengthNoLength of protein sequence
alphafoldVersionNoAlphaFold version used
modelCreatedDateNoISO date when model was created
uniprotAccessionNoUniProt accession code

Schema Changelog

Changes observed during successful MCP inspections.

  1. First observed

TDQS

A4.8/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already mark the tool as read-only, idempotent, and non-destructive. The description adds meaningful context about what data is returned (PDB/CIF/PAE URLs, pLDDT scores), going beyond the annotations without contradicting them.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a single, front-loaded sentence that packs the action, resource, and parameter semantics without any wasted words or repetition of annotations.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

With only one parameter and an output schema provided, the description is sufficient: it states the input format, the data retrieved, and the relationship to a sibling tool. No additional context is needed.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Despite 0% schema description coverage, the description fully explains the single parameter: it is a UniProt accession (e.g., 'P00533'), including an example and the note that it is explicitly expected. This entirely compensates for the missing schema description.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description uses a specific verb ('Fetch') and names the exact resource ('AlphaFold structure prediction metadata'), and differentiates from the sibling tool 'prediction' by noting it 'takes uniprot_id explicitly.' This makes the tool's purpose unmistakable.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines5/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

It explicitly compares itself to the sibling tool 'prediction' and states the key distinction ('takes uniprot_id explicitly'), giving clear guidance on when to choose this tool over the alternative.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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