Allen Structures
allen_structuresQuery the Allen Brain Atlas structure ontology — the canonical hierarchy of named brain regions (Field CA1, Primary visual area, Substantia nigra) with their acronyms, colors, parent structure, and full root-to-leaf structure_id_path. AUTHORITATIVE for resolving a brain-region name or acronym to the structure ID that Allen expression, connectivity and reference-space data are annotated against, and for establishing whether one region contains another.
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| acronym | No | Exact structure acronym, e.g. "CA1", "VISp", "SNr". | |
| graph_id | No | Structure graph to search. 1 = adult mouse brain (default), 10 = human brain, 17 = developing mouse. | |
| num_rows | No | Rows to return, 1-200 (default 25). | |
| start_row | No | 0-based offset for paging (default 0). | |
| structure_id | No | Allen structure id, e.g. 382 (Field CA1). | |
| name_contains | No | Substring of the structure name, e.g. "hippocamp", "visual area". Case-insensitive. |