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search_nodes

Search BioCosm nodes by name, gene symbol, target, therapeutic area, or company.

Results are ranked: exact name/brand matches first, then partial name matches, with a node-type prior (canonical drug/diagnostic nodes rank above gene-target nodes, which rank above ChEMBL salt-form duplicates). Nodes matched only via description/company/area rank last. Each result includes a name field for disambiguation.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
limitNoMaximum results to return (default 20, max 100)
queryYesSearch term (e.g. "breast cancer", "pembrolizumab", "Merck")

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
resultYes

Schema Changelog

Changes observed during successful MCP inspections. Dates show when Glama detected each change.

  1. First observed

TDQS

A4.1/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description effectively discloses the ranking algorithm (exact matches first, then partial, with node-type priors) and confirms the presence of a 'name' field. It stops short of mentioning rate limits or authentication, but covers the most critical behavioral aspects.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise with two clear paragraphs: the first states purpose, the second details ranking. Every sentence adds value, and there is no redundant or filler content.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the presence of an output schema, the description covers all essential aspects: search scope, ranking behavior, and the existence of a 'name' field for disambiguation. No important gaps remain for a search tool of this complexity.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 100%, so the baseline is 3. The description adds concrete examples for the query parameter (e.g., 'breast cancer', 'pembrolizumab', 'Merck') and explains the fields searched, providing meaningful context beyond the schema's generic 'Search term'.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool searches BioCosm nodes by multiple fields (name, gene symbol, target, therapeutic area, or company), matching a specific verb+resource pattern. It distinguishes itself from siblings like find_by_target by offering a broad, combined search.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No explicit guidance is provided about when to use this tool versus its siblings (find_by_target, find_by_phase, etc.). The description implies it's a general search but fails to state alternatives or when not to use it.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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TDQS

A3.9/5.0
Disambiguation4/5

Tools have mostly distinct purposes, though get_node and get_pos_score both provide probability-of-success data (get_node includes a summary, get_pos_score gives detailed factors). Descriptions clarify the difference, so confusion is minimal.

Naming Consistency4/5

Naming follows a verb_noun pattern but mixes verbs: 'find', 'get', 'list', 'search'. Within the 'get' group, all are consistent. The mix is not chaotic and remains predictable.

Tool Count5/5

13 tools cover the biomedical domain well without being excessive. Each tool has a clear purpose, from searching and listing to fetching detailed node data, statistics, and specialized reports.

Completeness5/5

For a read-only database, the tool set is complete. It supports search, filtered queries, detailed node retrieval, specialized data (PoS, freshness, staleness), and statistics. No obvious gaps for typical query needs.

Resources