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Noodle Biomedical Literature Discovery MCP

Explore a work literature neighborhood

get_work_neighborhood
Read-onlyIdempotent

Retrieve the bounded citation and semantic neighborhood around one Noodle work identifier. Results are for literature discovery and professional review, not diagnosis or treatment.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
work_idYesCanonical work identifier to place at the graph center.
from_work_idNoOptional prior work ID for a reversible graph path.

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
edgesYes
nodesYes
freshnessYes
anchor_pmidNo
stale_afterYes
generated_atYes
graph_versionYes
anchor_node_idYes
anchor_work_idNo
policy_versionYes
usage_boundaryYes
release_channelYes
contract_versionYes

TDQS

A3.8/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already cover read-only, idempotent, non-destructive behavior, lowering the burden. The description adds meaningful context by describing the result as 'bounded' and clarifying that it is for discovery/review rather than clinical use. It does not describe pagination or limits, but the output schema covers return structure and the annotations cover safety traits.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is two sentences with no filler. It front-loads the core action, states the scope, and adds a relevant boundary about appropriate use. Every sentence earns its place.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a read-only, idempotent retrieval tool with one required parameter and an existing output schema, the description is largely complete. It covers the purpose, scope, and appropriate-use boundary. The main gap is the absence of an explicit routing cue to sibling tools, but that gap is modest given the schema and annotations.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The input schema provides 100% parameter coverage, including descriptions for work_id and from_work_id, so the description adds little new parameter-level meaning. It only reinforces that the tool centers on 'one Noodle work identifier,' which is already in the schema. Baseline 3 is appropriate.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description states a clear action ('Retrieve the bounded citation and semantic neighborhood') and a specific resource ('one Noodle work identifier'). It distinguishes the tool from detail/search siblings by focusing on neighborhood retrieval, though it does not explicitly name the distinction from get_publication_neighborhood.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description gives useful context ('for literature discovery and professional review') and an exclusion ('not diagnosis or treatment'), so an agent can infer appropriate situations. However, it does not explicitly say when to use this tool versus get_publication_neighborhood, get_work_details, or search_biomedical_literature.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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TDQS

A3.9/5.0
Disambiguation4/5

The search and corpus tools are clearly distinct, and the two detail and two neighborhood tools are parallel but differentiated by identifier type (PMID vs. Noodle work ID). The main ambiguity is that get_publication_details and get_work_details both retrieve full records, so agents must understand which identifier they have. support_helena is unrelated but unambiguously separated.

Naming Consistency4/5

Most tools follow a consistent snake_case get_<resource>_<scope> pattern, and search_biomedical_literature fits the retrieval theme. support_helena is a minor outlier because it uses a different action verb and target, but it does not break the overall naming style.

Tool Count5/5

Seven tools is well-scoped for a read-only literature discovery server: corpus summary, semantic search, two lookup modes, two neighborhood exploration modes, and one support action. The count feels intentional and each tool serves a distinct part of the discovery workflow.

Completeness4/5

The read-only discovery surface is largely complete with corpus metadata, search, detailed record retrieval, and neighborhood exploration. A minor gap is that direct retrieval is only by PMID or Noodle work ID, not by DOI/PMCID, though search can serve as a workaround.