resume_research_run
Continue a research run from its file after an interruption or a failed test: the seal is checked, every pinned input the corpus still holds must have the content it had (a changed file is refused by name), and only the hypotheses with no evidence whose last attempt failed or was deferred are run, each with the settings it was registered with. Answered, settled and cancelled hypotheses are never run again, so a resumed run reaches the verdicts an uninterrupted one would. With budget_seconds, a long run continues in slices: call again with the returned file until nothing is pending. Returns the updated run file with the same outputs as run_discovery_programme.
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| run | Yes | the run file to continue. | |
| _files | No | The project: record references shaped like _subject. Their records become library documents a tool names in sequences/parts/document; a trace or alignment is found by file name. | |
| _subject | No | The record to act on: exactly one of sequence, accession (+source), sample (an id from list_samples) or file ({name, text} or {name, base64}); record_index picks one record of several. | |
| sequences | No | the corpus the run was registered over: library document or file names, or wired records. | |
| budget_seconds | No | seconds this call may spend running tests: whole tests run until the budget is spent and the rest are deferred, so a long programme returns before a client's timeout and resume_research_run continues it. A test is never cut short and at least one runs per call. Unset: every test runs in this call. In s. Advanced. |
Output Schema
| Name | Required | Description | Default |
|---|---|---|---|
| run | Yes | the whole programme as a sealed jane.research-run file: the ledger, every corpus input pinned by SHA-256, the last attempt at each hypothesis. Pass it back to continue | |
| report | Yes | the resume as text lines: what ran, what was refused, the verdicts | |
| resumed | Yes | the hypotheses this call ran | |
| decisions | Yes | every hypothesis: verdict, merged e-value, tests and merge rule |