| ci | No | the confidence level of the interval. | |
| group | No | the group compared. Left unset, the second group to appear. | |
| power | No | size the design for this power; leave empty to estimate the effect only. | |
| table | Yes | the pilot: a header row, then one row per observation. Tab- or comma-separated. | |
| value | Yes | the column holding the measurement. | |
| _files | No | The project: record references shaped like _subject. Their records become library documents a tool names in sequences/parts/document; a trace or alignment is found by file name. | |
| groups | No | one group label per data row, in row order, separated by commas, spaces or new lines, when the table has no group column. | |
| paired | No | the two groups are the same subjects measured twice, paired by row order within each group. Only applies when estimator is hedges_g or cohens_d. | |
| _subject | No | The record to act on: exactly one of sequence, accession (+source), sample (an id from list_samples) or file ({name, text} or {name, base64}); record_index picks one record of several. | |
| subtract | No | a column subtracted from the measurement row by row before anything else: a reference gene's Ct (giving delta-Ct), a baseline. | |
| estimator | No | Hedges' g corrects Cohen's d's small-sample bias by the exact J(df); Cohen's d is the uncorrected standardised difference; Glass's Δ standardises by the reference group's SD alone, for when the treatment changes the spread. Values: hedges_g (Hedges' g), cohens_d (Cohen's d), glass_delta (Glass's Δ). | hedges_g |
| pooled_sd | No | standardise by the pooled SD (Student). Off averages the two variances, with Welch's df. Only applies when estimator is hedges_g or cohens_d. | |
| reference | No | the group it is compared against (the control). Left unset, the first group to appear. | |
| sig_level | No | α for the sizing. Advanced. | |
| alternative | No | a two-sided interval, or one bounded on one side. Values: two.sided (Two-sided), less (Less (upper bound only)), greater (Greater (lower bound only)). Advanced. | two.sided |
| group_column | No | the column naming each row's group. Or give `groups`. | |