Skip to main content
Glama

Jean — Molecular Biology & Genomics

describe_project

Read-only

Describe the project the way the copilot is told about it: every file, what it carries and which tool reads it, which files are indexed or paired with each other, and the codon-usage tables a tool resolves by name.

Input Schema

NameRequiredDescriptionDefault
titleNothe project's name, for the header line when the files were sent with the call. In the app the open project's own title is used.
_filesNoThe project: record references shaped like _subject. Their records become library documents a tool names in sequences/parts/document; a trace or alignment is found by file name.
_subjectNoThe record to act on: exactly one of sequence, accession (+source), sample (an id from list_samples) or file ({name, text} or {name, base64}); record_index picks one record of several.

Output Schema

NameRequiredDescriptionDefault
textYesthe project section exactly as the copilot receives it, one line per fact
filesYeshow many files it describes
unreadYesfiles sent with the call that the importer could not read, each with its reason. They are not in the project, exactly as a file the app refuses at import is not

Schema Changelog

Changes observed during successful MCP inspections.

  1. Added

TDQS

C2.8/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already declare readOnlyHint=true, destructiveHint=false, and openWorldHint=false, so the safety profile is covered. The description adds useful behavioral context that the output is a copilot-facing description of every file, what it carries, which tool reads it, index/pairing relationships, and codon-usage tables resolved by name. It does not say whether it operates on an open project versus supplied files, which matters given the optional title/_files inputs.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness3/5

Is the description appropriately sized, front-loaded, and free of redundancy?

It is a single sentence, so length is fine, but it is a run-on list of clauses whose head phrase ("the way the copilot is told about it") delays the concrete payload. Front-loading the actual output (files, indexing, codon tables) would improve it.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

An output schema exists, so return values needn't be explained, and annotations cover safety. Still, with nested _subject objects, an enumerated source, and an ambiguous open-project vs supplied-files mode, the description leaves the agent unsure which invocation mode is expected.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 100%, so parameters are already documented; the description adds little beyond noting that resolvable tables are looked up by name. It doesn't clarify the interaction between the optional title and _files, or what happens when both are omitted (app's open project). Baseline 3 is appropriate.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose3/5

Does the description clearly state what the tool does and how it differs from similar tools?

"Describe the project" is a clear verb+resource, and the description hints at contents (files, indexing/pairing, codon-usage tables). However, the phrasing "the way the copilot is told about it" is opaque, and it is not differentiated from near-siblings like get_open_record, list_library, or describe_tools, so an agent can only partially infer what this returns.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

There is no when-to-use or when-not-to-use guidance and no alternative named, despite a dense sibling set with tools that surface project files and records (get_open_record, list_library, describe_tools, load_record). The only implicit cue is mention of a copilot context, which does not tell an agent when to call this.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

Try in Browser

Glama MCP Gateway

Add one secure layer between your agents and this server.

Resources