classify_grammar_part
Read-only
Which Golden Braid / MoClo / Yeast ToolKit grammar, position and level the open plasmid represents (or null). Reads the record's own annotations, which is what lets an assembled transcription unit be recognised by its backbone half, and what lets a Level-0 module whose own backbone carries an extra site for the release enzyme be told from that backbone. Configured entry vectors are a Parts Bin concept and are NOT available here, so a TU sitting in a named acceptor is reported by its overhangs rather than by that acceptor's name.
Input Schema
TableJSON Schema
| Name | Required | Description | Default |
|---|---|---|---|
| _files | No | The project: record references shaped like _subject. Their records become library documents a tool names in sequences/parts/document; a trace or alignment is found by file name. | |
| _subject | No | The record to act on: exactly one of sequence, accession (+source), sample (an id from list_samples) or file ({name, text} or {name, base64}); record_index picks one record of several. |
Output Schema
TableJSON Schema
| Name | Required | Description | Default |
|---|---|---|---|
| level | Yes | assembly level | |
| spans | Yes | for a COMPOSITE position, the slots it occupies end to end (YTK Type 234 spans 2, 3 and 4); empty otherwise | |
| grammar | Yes | grammar name, or empty when unclassified | |
| isVector | Yes | true when a part at this position is also the acceptor backbone for its level (YTK Type 8, 8a, 678) | |
| position | Yes | position name within the grammar | |
| releaseCuts | Yes | how many times the release enzyme cut. 2 for a clean excise; 3 for a GoldenBraid Level-0 module, whose pUPD backbone carries its own site, so the backbone is released in two pieces and the insert is identified by carrying no backbone marker | |
| releaseEnzyme | Yes | enzyme that releases the part | |
| classification | Yes | the full classification (null when no grammar matches) |