addedInput schema / properties / section_limit
Added value: +{
+ "description": "Window size for one list section on a sections re-call: return at most this many items of it (1–500). Requires sections naming exactly one list section, e.g. [\"variants\"] (or ptms, domains, goTerms). Omit together with section_offset to return the whole section.",
+ "maximum": 500,
+ "minimum": 1,
+ "type": "integer"
+}
addedInput schema / properties / section_offset
Added value: +{
+ "description": "Zero-based index of the first item in the windowed section. Defaults to 0. Pass the previous response's nextOffset to page forward. Same requirements as section_limit; set without section_limit, returns every item from this index on.",
+ "maximum": 9007199254740991,
+ "minimum": 0,
+ "type": "integer"
+}
changedInput schema / properties / sections / description
Previous value: -"Only used to re-call after a kind: \"outline\" response — pass a subset of the outlined section keys to fetch just those sections. Do not pass on the initial call."New value: +"Only used to re-call one accession after a kind: \"outline\" response — pass a subset of the outlined section keys to fetch just those sections. Requires exactly one accession: a batch with sections is rejected, so trim a batch with fields. A requested section the record lacks is named in absentSections, not an error. Do not pass on the initial call."
addedOutput schema / properties / absentSections
Added value: +{
+ "description": "Requested section keys this record does not carry — UniProt holds no annotation of that kind for it, or fields excluded it. Not an error: the other requested sections are returned. Present only on a sections re-call that named one.",
+ "items": {
+ "description": "A requested section key the record does not carry.",
+ "type": "string"
+ },
+ "type": "array"
+}
addedOutput schema / properties / cap
Added value: +{
+ "description": "The section_limit applied. Present when truncated.",
+ "type": "number"
+}
changedOutput schema / properties / error / properties / data / properties / reason / description
Previous value: -"Machine-readable failure mode. Declared by this tool: `all_not_found`: Every accession in the batch was well-formed but unknown to UniProtKB. Other values are possible when a failure originates below the handler."New value: +"Machine-readable failure mode. Declared by this tool: `sections_single_accession`: sections was passed with more than one accession — rejected before any request. sections re-calls a single outlined record. `unknown_section`: sections named a key this tool never emits — rejected before any request. The message lists every valid key. `invalid_section_window`: section_limit or section_offset was set without sections naming exactly one list section — no sections, several, or a non-list section such as organism or xrefs. Rejected before any request. `all_not_found`: No accession in the batch resolved to an active entry — each was unknown to UniProtKB or inactive (merged, demerged, or deleted). The message names each inactive accession and its replacement. `invalid_fields`: UniProtKB rejected the fields value — the message relays UniProt naming the rejected field. Other values are possible when a failure originates below the handler."
changedOutput schema / properties / error / properties / data / properties / reason / examples
Previous value: -[
- "all_not_found"
-]New value: +[
+ "sections_single_accession",
+ "unknown_section",
+ "invalid_section_window",
+ "all_not_found",
+ "invalid_fields"
+]
changedOutput schema / properties / failed / description
Previous value: -"Accessions that were well-formed but not found in UniProtKB. Present when kind is \"full\"."New value: +"Accessions that were well-formed but did not resolve to an active entry — unknown to UniProtKB, or inactive (merged, demerged, or deleted). Present when kind is \"full\"."
changedOutput schema / properties / failed / items / properties / error / description
Previous value: -"Why it failed and how to recover."New value: +"Why it failed and how to recover. For an inactive accession: the merge target to retry with, the demerge products to choose among, or the UniParc ID that keeps a deleted sequence."
addedOutput schema / properties / nextOffset
Added value: +{
+ "description": "section_offset for the next window (same section_limit). Present while items remain.",
+ "type": "number"
+}
changedOutput schema / properties / notice / description
Previous value: -"Re-call guidance when kind is \"outline\" — re-call the same accession with sections:[...] to pull specific sections."New value: +"Re-call guidance. On kind \"outline\": re-call the same accession with sections:[...] to pull specific sections. On a section window: the section_offset that pages the rest, or why the window came back empty."
addedOutput schema / properties / shown
Added value: +{
+ "description": "Items in the returned window. Present when truncated.",
+ "type": "number"
+}
addedOutput schema / properties / totalCount
Added value: +{
+ "description": "Items in the windowed section before section_limit/section_offset applied. Present on every windowed call; 0 when the record lacks the section.",
+ "type": "number"
+}
addedOutput schema / properties / truncated
Added value: +{
+ "description": "True when items remain past the returned window. Absent on the final window.",
+ "type": "boolean"
+}
addedOutput schema / properties / window
Added value: +{
+ "additionalProperties": false,
+ "description": "The window applied to succeeded[0]'s one requested section. Present only when section_limit or section_offset was set; totalCount and nextOffset place it in the full section.",
+ "properties": {
+ "offset": {
+ "description": "Index of the first returned item within the full section.",
+ "type": "number"
+ },
+ "section": {
+ "description": "The section key section_limit/section_offset windowed.",
+ "type": "string"
+ }
+ },
+ "required": [
+ "section",
+ "offset"
+ ],
+ "type": "object"
+}