addedOutput schema / properties / summaries / items / properties / bucket_count
Added value: +{
+ "description": "Number of gnomAD coverage buckets summarized: every returned bucket overlapping the target bases. gnomAD returns every bucket between the first and last record of a track, so an empty bucket inside that span counts as zero depth; buckets past the outermost records are not returned and not counted.",
+ "type": "number"
+}
addedOutput schema / properties / summaries / items / properties / bucket_size
Added value: +{
+ "description": "Width of each gnomAD coverage bucket in bp: 1 for a region spanning under 850 bp, otherwise about 1/500 of the queried size. Depth and fraction values describe buckets, not single bases.",
+ "type": "number"
+}
changedOutput schema / properties / summaries / items / properties / fraction_over_1 / description
Previous value: -"Mean fraction of samples covered at ≥1×; null when no data."New value: +"Fraction of samples covered at ≥1×, averaged over the summarized buckets (gnomAD rounds each bucket's fraction up to the next 0.01); null when no data."
changedOutput schema / properties / summaries / items / properties / fraction_over_10 / description
Previous value: -"Mean fraction of samples covered at ≥10×; null when no data."New value: +"Fraction of samples covered at ≥10×, averaged over the summarized buckets (gnomAD rounds each bucket's fraction up to the next 0.01); null when no data."
changedOutput schema / properties / summaries / items / properties / fraction_over_100 / description
Previous value: -"Mean fraction of samples covered at ≥100×; null when no data."New value: +"Fraction of samples covered at ≥100×, averaged over the summarized buckets (gnomAD rounds each bucket's fraction up to the next 0.01); null when no data."
changedOutput schema / properties / summaries / items / properties / fraction_over_15 / description
Previous value: -"Mean fraction of samples covered at ≥15×; null when no data."New value: +"Fraction of samples covered at ≥15×, averaged over the summarized buckets (gnomAD rounds each bucket's fraction up to the next 0.01); null when no data."
changedOutput schema / properties / summaries / items / properties / fraction_over_20 / description
Previous value: -"Mean fraction of samples covered at ≥20×; null when no data."New value: +"Fraction of samples covered at ≥20×, averaged over the summarized buckets (gnomAD rounds each bucket's fraction up to the next 0.01); null when no data."
changedOutput schema / properties / summaries / items / properties / fraction_over_25 / description
Previous value: -"Mean fraction of samples covered at ≥25×; null when no data."New value: +"Fraction of samples covered at ≥25×, averaged over the summarized buckets (gnomAD rounds each bucket's fraction up to the next 0.01); null when no data."
changedOutput schema / properties / summaries / items / properties / fraction_over_30 / description
Previous value: -"Mean fraction of samples covered at ≥30×; null when no data."New value: +"Fraction of samples covered at ≥30×, averaged over the summarized buckets (gnomAD rounds each bucket's fraction up to the next 0.01); null when no data."
changedOutput schema / properties / summaries / items / properties / fraction_over_5 / description
Previous value: -"Mean fraction of samples covered at ≥5×; null when no data."New value: +"Fraction of samples covered at ≥5×, averaged over the summarized buckets (gnomAD rounds each bucket's fraction up to the next 0.01); null when no data."
changedOutput schema / properties / summaries / items / properties / fraction_over_50 / description
Previous value: -"Mean fraction of samples covered at ≥50×; null when no data."New value: +"Fraction of samples covered at ≥50×, averaged over the summarized buckets (gnomAD rounds each bucket's fraction up to the next 0.01); null when no data."
changedOutput schema / properties / summaries / items / properties / mean_depth / description
Previous value: -"Mean read depth averaged across positions; null when no data."New value: +"Mean read depth: the average of the summarized buckets’ mean depths; null when no data."
changedOutput schema / properties / summaries / items / properties / median_depth / description
Previous value: -"Median read depth across positions; null when no data."New value: +"Median, across the summarized buckets, of each bucket’s depth (the average of its per-base medians); null when no data."
changedOutput schema / properties / summaries / items / properties / positions / description
Previous value: -"Number of base positions summarized across the target."New value: +"Target bases inside the summarized buckets: of start..stop for a region, of the exons ±75 bp for a gene or transcript. Falls short of the target when the track has no records at its edges (typically outside the exome capture); those bases are left out, not counted as zero depth."
changedOutput schema / properties / summaries / items / required
Previous value: -[
- "source",
- "positions",
- "mean_depth",
- "median_depth",
- "fraction_over_1",
- "fraction_over_5",
- "fraction_over_10",
- "fraction_over_15",
- "fraction_over_20",
- "fraction_over_25",
- "fraction_over_30",
- "fraction_over_50",
- "fraction_over_100"
-]New value: +[
+ "source",
+ "positions",
+ "bucket_count",
+ "bucket_size",
+ "mean_depth",
+ "median_depth",
+ "fraction_over_1",
+ "fraction_over_5",
+ "fraction_over_10",
+ "fraction_over_15",
+ "fraction_over_20",
+ "fraction_over_25",
+ "fraction_over_30",
+ "fraction_over_50",
+ "fraction_over_100"
+]