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chembl-dataframe-describe

chembl_dataframe_describe
Read-onlyIdempotent

List the tables and columns staged on a canvas by chembl_get_bioactivities — inspect before calling chembl_dataframe_query to write correct SQL. Returns each table with its row count, kind (table | view), and column names + types. Requires CANVAS_PROVIDER_TYPE=duckdb.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
canvas_idYesCanvas ID returned by chembl_get_bioactivities (spilled: true).

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
errorNoPresent when the call failed. Absent on success.
tablesNoTables and views staged on the canvas.

TDQS

A4.5/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already declare readOnlyHint=true, idempotentHint=true, and openWorldHint=false, covering the safety profile. The description adds value by specifying the return contents (row count, kind, column names/types) and the environment requirement, which the annotations do not convey.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is three short, tightly packed sentences. The primary purpose is front-loaded, and every sentence adds necessary information (what it lists, why to use it, return format, and a prerequisite). No filler or redundant phrases.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a simple tool with one parameter, an output schema, and annotations covering mutability, the description covers everything needed for correct invocation: its role relative to a sibling, the return content, and an environment requirement. Nothing essential is missing.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The schema covers the single parameter (canvas_id) with a description ('Canvas ID returned by chembl_get_bioactivities (spilled: true)'). The tool description does not add any new meaning beyond the schema, so a baseline score of 3 is appropriate.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description states a specific verb (List), a concrete resource (tables and columns staged on a canvas), and the source tool (chembl_get_bioactivities). It also names the sibling chembl_dataframe_query to distinguish this inspection tool from the query tool, making its purpose unmistakable.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines5/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

It gives explicit usage context: 'inspect before calling chembl_dataframe_query to write correct SQL' and states an environmental prerequisite (CANVAS_PROVIDER_TYPE=duckdb). This tells the agent precisely when to use the tool and what it enables.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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TDQS

A4.6/5.0
Disambiguation5/5

Each tool targets a distinct resource or action: search for molecules and targets, fetch bioactivities, assays, and drug info, plus two dedicated dataframe helpers for analysis. There is no functional overlap—even the two dataframe tools are clearly separated as describe vs query. Agents can easily select the right tool for each step in a workflow.

Naming Consistency5/5

All tools follow a consistent chembl_verb_noun pattern using snake_case (e.g., chembl_search_molecules, chembl_get_bioactivities, chembl_dataframe_query). The naming is uniform and predictable, with the verb always preceding the object. Minor deviation like dataframe_describe vs chembl_get_* still fits the same prefix and style, making it highly consistent.

Tool Count5/5

With 7 tools, the server is well-scoped for its domain of compound-target bioactivity discovery and analysis. Each tool serves a clear purpose without redundancy, covering search, retrieval, provenance, pharmacology, and data manipulation. This is a textbook example of a focused toolset where every tool earns its place.

Completeness5/5

The tool surface covers the full read-only lifecycle: discover compounds and targets, fetch bioactivity measurements, drill into assay provenance, retrieve drug pharmacology, and perform aggregate analysis via SQL. All major workflows (target deconvolution, lead finding, selectivity assessment, and comparative ranking) are supported without dead ends. The only possible gap is write operations, but they are clearly out of scope for a reference database.