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Medical Terminologies MCP

by io.github.SidneyBissoli
OverviewDiscussionsAdmin

MeSH Tree Locations

mesh_tree
Read-onlyIdempotent

Get the tree hierarchy location(s) for a MeSH descriptor.

Use this tool to:

  • See where a term fits in the MeSH hierarchy

  • Understand broader/narrower relationships

  • Find related terms in the same branch

MeSH tree numbers show the hierarchical path (e.g., C14.280.647 for Myocardial Infarction).

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
mesh_idYesMeSH Descriptor ID (e.g., D015242, D003920)

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
mesh_idYes
provenanceYesProvenance block (contract v1.1): source, URL, data vintage, extraction instant, origin diagnostics, citation, license
attributionYesCanonical source URLs of this response (attribution list)
tree_numbersYes

Schema Changelog

Changes observed during successful MCP inspections.

  1. Changed3 schema fields changed
    • changedOutput schema / properties / provenance / description
      Previous value: -"Provenance block (contract v1.0): source, URL, data vintage, extraction instant, citation, license"New value: +"Provenance block (contract v1.1): source, URL, data vintage, extraction instant, origin diagnostics, citation, license"
    • addedOutput schema / properties / provenance / properties / retrieval
      Added value: +{
+  "anyOf": [
+    {
+      "additionalProperties": false,
+      "properties": {
+        "anomalies": {
+          "description": "Anomalias superadas até o sucesso, somadas por classe, em ordem fixa; [] se nenhuma",
+          "items": {
+            "additionalProperties": false,
+            "properties": {
+              "count": {
+                "description": "Ocorrências desta classe na chamada",
+                "maximum": 9007199254740991,
+                "minimum": 1,
+                "type": "integer"
+              },
+              "kind": {
+                "description": "Classe da anomalia (vocabulário fechado do contrato)",
+                "enum": [
+                  "timeout",
+                  "network",
+                  "http_4xx",
+                  "http_5xx",
+                  "rate_limited",
+                  "malformed_body"
+                ],
+                "type": "string"
+              }
+            },
+            "required": [
+              "kind",
+              "count"
+            ],
+            "type": "object"
+          },
+          "type": "array"
+        },
+        "attempts": {
+          "description": "Tentativas somadas, incluindo as repetidas (>= requests)",
+          "maximum": 9007199254740991,
+          "minimum": 1,
+          "type": "integer"
+        },
+        "requests": {
+          "description": "Idas distintas à origem que compõem esta resposta (fatias, páginas)",
+          "maximum": 9007199254740991,
+          "minimum": 1,
+          "type": "integer"
+        },
+        "unstable": {
+          "description": "true se houve repetição (attempts > requests) ou alguma anomalia",
+          "type": "boolean"
+        }
+      },
+      "required": [
+        "requests",
+        "attempts",
+        "anomalies",
+        "unstable"
+      ],
+      "type": "object"
+    },
+    {
+      "type": "null"
+    }
+  ],
+  "description": "Origin diagnostics of THIS source in this call (contract v1.1): requests made to the upstream, attempts summed across retries, anomalies worked around (kind + count); unstable=true when any anomaly happened. null when nothing was measured (bundled dataset, or response served entirely from cache)"
+}
    • changedOutput schema / properties / provenance / required
      Previous value: -[
-  "source",
-  "source_url",
-  "data_vintage",
-  "retrieved_at",
-  "citation",
-  "license"
-]New value: +[
+  "source",
+  "source_url",
+  "data_vintage",
+  "retrieved_at",
+  "retrieval",
+  "citation",
+  "license"
+]
  2. Changed1 schema field changed
    • addedInput schema / additionalProperties
      Added value: +false
  3. First observed

TDQS

A4.1/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already declare readOnlyHint, idempotentHint, openWorldHint and non-destructive behavior, so the safety profile is covered. The description adds genuinely useful return context by showing the tree-number format (e.g., C14.280.647 for Myocardial Infarction), which is not derivable from the annotations.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Front-loaded with the core purpose, then scannable bullets, then a concrete example. Slight redundancy between the opening line and the first bullet ('where a term fits in the MeSH hierarchy'), but nothing is wasted.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

An output schema exists, so return-value documentation is not required, and the safety profile is carried by annotations. The description covers purpose, use cases, and tree-number format, leaving only trivial gaps for a simple one-parameter lookup.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 100% with a single documented mesh_id parameter including its pattern and an example. The description adds nothing beyond the schema about the parameter, so the baseline 3 applies.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

States a specific verb and resource ('Get the tree hierarchy location(s) for a MeSH descriptor') and the bullet list narrows the scope to hierarchy/branch relationships. This is clearly distinguishable from siblings like mesh_descriptor, mesh_search, and mesh_qualifiers.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The 'Use this tool to' bullets give concrete context: seeing hierarchical fit, understanding broader/narrower relationships, finding related terms in the same branch. There is no explicit when-not-to-use or named alternative, so it stops short of a 5.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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