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Primer Tm & dimers / 引物 Tm 计算

primer_tm
Read-only

Primer Tm & dimers / 引物 Tm 计算 | USE WHEN: Tm, GC% and self/cross dimer check for given primer sequences | ALIASES: Tm, 引物Tm, 退火温度, GC含量, 二聚体, primer dimer, melting temperature | RETURNS: Tm、GC、二聚体

Input Schema

NameRequiredDescriptionDefault
sequenceYes引物序列

Schema Changelog

Changes observed during successful MCP inspections.

  1. Added

TDQS

A3.6/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already declare readOnly=true, destructive=false and openWorld=false, so the safety profile is covered. The description adds the return contents (Tm, GC, dimers), which matters because there is no output schema, but it says nothing about the Tm model/assumptions (salt, concentration, nearest-neighbor) or sequence-format constraints that would affect interpretation of results.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Pipe-delimited and front-loaded with the tool's identity, followed by trigger and return summary; nothing is buried. The alias list is long and bilingual duplication adds bulk, but each section serves a retrieval or routing purpose.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a one-parameter, non-destructive calculator with no output schema, the description supplies the trigger, the returned quantities, and alias coverage. Only the Tm computation assumptions are left unexplained, a minor gap for a tool this simple.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

With a single parameter and 100% schema description coverage, the schema already documents 'sequence'. The description only restates 'given primer sequences' and adds no format detail such as 5'->3' orientation, allowed characters, or length limits, so baseline 3 applies.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description names a specific verb+resource: computing Tm, GC% and self/cross dimer status for supplied primer sequences. An agent can tell this is a calculation over an existing sequence rather than a design tool, though it never explicitly names the closest sibling (pcr_primer_design) to draw the contrast.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The 'USE WHEN' clause gives a clear trigger condition: when you already have primer sequences and need Tm, GC% or dimer checks. It stops short of stating when NOT to use it (e.g. use pcr_primer_design to generate primers first), so the guidance is contextual but not exhaustive.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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