CRISPR gRNA designer
crispr_grna_designFind and score candidate guide RNAs (protospacer + PAM) in a target DNA for common nucleases (SpCas9, SpCas9-NG, SaCas9, Cas12a). PREDICTED, NOT MEASURED. No held-out skill statistic is claimed. Both are pre-2016 models superseded in accuracy by Rule Set 2 / Azimuth and by DeepSpCas9, neither of which is shipped here. Treat the ordering as a ranking aid, not an efficiency prediction. Valid for: SpCas9 with an NGG PAM and a 20 nt spacer, and only when enough genomic flanking context is present to build the model's 30-mer / 35-mer window — both scores are null rather than padded otherwise. Nothing is predicted for SaCas9, Cas12a or SpCas9-NG.
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| minScore | No | Only return guides with a heuristic score at least this high (0–100). | |
| nuclease | No | Nuclease id. Omit to just list the available nucleases (no scan is performed). | spcas9 |
| sequence | Yes | Nucleotide sequence (raw or FASTA; IUPAC accepted). | |
| searchReverseStrand | No | Also scan the reverse strand for guides. |