biobtree_atlas
Curated Sugi Atlas knowledge for genes, diseases, and drugs (built from biobtree's own data).
SYNTAX: biobtree_atlas(entities=["TP53","imatinib"])
CALL THIS FIRST for a gene/disease/drug question (what it is, its biology, disease/drug/clinical context) - returns a concise, citable digest to ground your answer. Cite the returned canonical_url.
Pass the entity name(s) from the question; covered entities return content + citation, uncovered ones are listed in not_covered.
Default returns a compact digest (Summary + Identifiers). Each result lists the page's
sections(top-level and sub-sections); pass section="Disease & clinical" (use a name fromsections) for one zone, or full=true for the entire page (large). For big sections, query one entity at a time; full=true and large sections across several entities may be trimmed to fit.For entities not covered, or for specific ID mappings / cross-references / filters, use biobtree_map / biobtree_entry instead.
RETURNS: per entity {type, canonical_url, content, sections} + not_covered list
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| full | No | Return the entire page (large; may exceed output limits - avoid for multiple entities) | |
| section | No | Return one section instead of the digest; use a name from the result's `sections` (e.g. 'Disease & clinical') | |
| entities | Yes | Gene symbols / disease names / drug names from the question |