"Ktor" matching MCP tools:

• list_questionsA

  Oliver's mTOR AtlasA

  The Atlas's open questions (evidence gaps with testable hypotheses) and frontier questions. Paged. By default still_open is shortened at a sentence boundary (still_open_truncated); get_question has the full text, or pass brief=false.

  ConnectorNo auth

• search_entitiesA

  Oliver's mTOR AtlasA

  Find genes/proteins, complexes, drugs, diseases, processes, nutrients and outcomes by name or synonym. Each result says where it matched (match_field: name, synonym or description); use match="name" to leave out description-only hits.

  ConnectorNo auth

• search_studiesA

  Oliver's mTOR AtlasA

  Search the curated studies by keywords, optionally filtered by evidence code, a linked entity (gene, drug, disease...) and year range. Searches title, finding, authors (author-list form "Sabatini DM" and full names of profiled authors), PMID, DOI, PMCID, linked entities and their synonyms, journal, model system and the abstract excerpt. A query that is a PMID or DOI returns that study. Returns summary records with evidence codes and URLs.

  ConnectorNo auth

• validate_onion_addressA

  OnionLens Tor ToolsB

  Validate a Tor v3 address format, version and checksum without a network request.

  ConnectorNo auth

• get_studyA

  Oliver's mTOR AtlasA

  Full record for one study by Atlas ID (e.g. "SAB1994"), PMID, DOI or PMCID: abstract excerpt, extracted findings, linked entities, the relations it supports or contradicts, related open questions.

  ConnectorNo auth

• find_relationsA

  Oliver's mTOR AtlasA

  Signed, evidence-linked pathway relations (claims such as "Rheb activates mTORC1"). Filter by an entity on either end, by source/target, effect, contested status or minimum strength of the best supporting evidence.

  ConnectorNo auth

• search_authorsA

  Oliver's mTOR AtlasA

  People in the Atlas by full name ("Claudio De Virgilio"), author-list form ("De Virgilio C"), ORCID or lab. results are authors with a profile page (full name, ORCID, lab, their study IDs); in_author_lists are matching names in study author lists without a profile.

  ConnectorNo auth

• find_contradictionsA

  Oliver's mTOR AtlasA

  Relations the Atlas marks as contested or that carry conflicting studies, with both sides of the evidence. status says which; breakdown splits the total. A contested relation with no conflicting study listed is flagged conflicting_studies_missing; relations named in its note or boundary are shown in named_in_text (a mention is not evidence). Paged: pass next_offset as offset for the rest. Optionally limited to one entity.

  ConnectorNo auth

• get_authorA

  Oliver's mTOR AtlasA

  One profiled author by profile id ("claudio-de-virgilio"), full name, author-list form or ORCID: lab, role, profile URL and short cards of their studies in the Atlas.

  ConnectorNo auth

• atlas_aboutA

  Oliver's mTOR AtlasA

  Dataset version, corpus snapshot date, counts, evidence-code legend and how to cite the dataset. When the Atlas does not report the contested and conflicting counts itself, derived_counts adds them, computed from the relations, so they can be compared with find_contradictions.

  ConnectorNo auth

• get_relationA

  Oliver's mTOR AtlasA

  One pathway relation by ID (e.g. "RHEB-MTORC1"): mechanism, boundary conditions, confidence, supporting and conflicting studies.

  ConnectorNo auth

• evidence_betweenA

  Oliver's mTOR AtlasA

  Direct curated relations between two entities (either direction) with full cards for the supporting and conflicting studies. Answers questions such as "what is the evidence that A acts on B?". A study that repeats within the answer is sent in full once and afterwards as a short card with full_card_in.

  ConnectorNo auth

• retrieval_fixtureA

  OnionLens Tor ToolsB

  Return a deterministic UTF-8 retrieval fixture for transport and parsing checks.

  ConnectorNo auth

• get_entityB

  Oliver's mTOR AtlasA

  One entity (gene/protein, complex, drug, disease, process...) with its linked studies as short cards (first studies_limit) and every pathway relation it takes part in as a one-line claim. Accepts an id, a name or a synonym.

  ConnectorNo auth

• get_questionB

  Oliver's mTOR AtlasA

  One open or frontier question by ID (e.g. "H1", "F2"): the gap, what changed, what is still open, how it could be tested, linked studies.

  ConnectorNo auth

• list_resourcesC

  OnionLens Tor ToolsB

  List primary-source Tor integration references and controlled retrieval fixtures.

  ConnectorNo auth