Download specific ENCODE files by their accession numbers to a local directory, with MD5 verification and optional organization by experiment or format.
AGPL 3.0
513,407 tools. Updated 2026-09-05 12:04
"How to work with local files" matching MCP tools:
- Upload one to ten local files as attachments to a single Polarion work item in one request, with duplicate filename support and a 25 MiB size cap.MIT
- Attach a local file to a work package by providing its path and the work package ID.MIT
- Upload local files to convert them into Markdown format using the Markdownify MCP Server. Get instructions for handling files that aren't accessible to remote servers.MIT
- Rank files by how many other files import them to identify dependency hotspots and critical refactoring targets.MIT
- Launch the Perssua desktop app to begin a session with a chosen assistant, initial prompt, context, and local text files. Use it to start a working session on the same machine.MIT
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- Upload local files to Capacities as media objects, using background mode for large batches and returning partial results on failures.MIT
- Export your Customaise scripts to a local directory as .user.js or .agent.js files, with a manifest mapping filenames to script IDs. Sets up an IDE workspace for editing your own scripts.MITDestructive
- Read local text files with injection detection and sanitization. Rejects binary files and flagged content to prevent prompt injection.AGPL 3.0
- Export bundled Coalesce skills to a local directory. Edit user_skills files to customize or override defaults, with no risk of overwriting existing files.MIT
- Upload local .html/.htm files to a StelaSpace space and get permanent, shareable URLs. Reuse a slug to publish updated versions.MIT
- List markdown documentation files from a local repository's docs/ directory, with optional pattern filtering.MIT
- Upload local files to Google Cloud Run by specifying absolute file paths. Enables deployment of local filesystem assets to a specified Cloud Run service in the user's Google Cloud project.Apache 2.0
- Upload local PDF files to parse content for presentation creation. Use optional logo or template IDs for custom branding. Supports multiple files and slide modes.MIT
- Set custom categorization rules for files, specifying categories by extension or filename pattern to control how files are organized in the current session.MIT
- Generate OpenSubtitles hash values from local movie files to enable subtitle matching and downloading through the OpenSubtitles API.MIT
- Install AI agent skills from agentskill.sh by downloading skill files and documentation to your local directory for immediate use.MIT
- Transfer files between local and remote systems. Specify upload or download direction with local and remote file paths.GPL 3.0
- Register a local folder to make its documents searchable. Indexes supported files in the background, with optional include/exclude globs.MIT
- Count work items with optional grouping by state, priority, project, or assignee. Use PQL filters to get analytics like 'how many urgent items?' without fetching full work item data.MIT
- Search project documentation and README files using semantic search to answer conceptual questions about how features work or system architecture.MIT