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"Exploring RAG through defined workspaces" matching MCP servers:

  • research-mentor-rag

    GelortZCY
    A
    license
    C
    quality
    B
    maintenance
    MCP server that integrates a 1200-paper RAG database with six tools to support research workflows across stages like hypothesis, experiment, statistics, and writing. It routes requests to specialized skills and real-time frontier searches to provide evidence-grounded research mentoring.
    6
    Apache 2.0

  • cite-rag-mcp

    xiaofei03
    F
    license
    -
    quality
    B
    maintenance
    A local MCP server for evidence-safe academic citation workflows, including verified-reference retrieval, Zotero duplicate detection and import, and Word export via Pandoc with zotero.lua.

  • rag-paper

    i1ight
    A
    license
    -
    quality
    A
    maintenance
    A local-first paper RAG server that enables searching and managing academic PDFs via MCP tools, supporting metadata enrichment and citation graphs.
    1
    MIT

  • Zotero Chunk RAG

    ccam80
    A
    license
    A
    quality
    A
    maintenance
    Enables passage-level semantic search over a Zotero library by extracting, chunking, and embedding PDF text using Gemini and ChromaDB. It provides MCP tools to perform topical searches and retrieve specific document passages with surrounding context.
    4
    9
    MIT

  • MCP-based Academic Paper

    Ta-Gu
    F
    license
    -
    quality
    C
    maintenance
    Enables AI coding assistants to query private academic paper collections via standard MCP tools, with hybrid retrieval, reranking, and inline citations.

  • MMWRAG

    mikrominiw
    A
    license
    -
    quality
    B
    maintenance
    Bilingual RAG for scientific literature with search-only MCP server. Enables hybrid retrieval and reranking over indexed textbooks/papers.
    MIT

  • LongBook Verifier

    Mormolykos
    A
    license
    -
    quality
    C
    maintenance
    An MCP server that evaluates whether retrieval methods and AI outputs are grounded in long narrative manuscripts by retrieving evidence and scoring coverage deterministically, without external model APIs. It provides tools for chunking, indexing, retrieval, and evaluation.
    1
    MIT

  • ryogena-pubmed-mcp

    KyleVick4
    A
    license
    A
    quality
    D
    maintenance
    Exposes NCBI PubMed as MCP tools for searching literature, fetching abstracts, exploring citation graphs, and finding author publications without requiring an API key.
    4
    MIT

  • StructureAI MCP Server

    avatrix1
    F
    license
    A
    quality
    D
    maintenance
    Extracts structured JSON data from unstructured text using predefined schemas for receipts, invoices, resumes, and emails. It allows users to transform messy text into organized data through built-in or custom-defined fields.
    1

  • Omics AI MCP Server

    mfiume
    A
    license
    A
    quality
    D
    maintenance
    Enables AI agents to conversationally interact with genomics research networks for data analysis and discovery across multiple Omics AI Explorer platforms. It provides tools for exploring data collections, examining table schemas, and executing SQL queries against datasets like Viral AI and Neuroscience AI.
    6
    1
    MIT
  • ontoloom by ExtensityAI

    ontoloomofficial

    ExtensityAI
    A
    license
    -
    quality
    B
    maintenance
    MCP server for building and exploring OWL 2 ontologies using AI agents, with tools for axiom management, structural pattern matching, and persistent selections.
    21
    BSD 3-Clause

  • Beale-CC

    philo-groves
    A
    license
    -
    quality
    C
    maintenance
    Local MCP server that bridges Beale research workspaces to Claude Code, providing typed memory, workspace search, revisioned runbooks, and research profile context via a stdio plugin.
    MIT

  • ArXiv Research Intelligence

    RatnamOjha
    A
    license
    -
    quality
    D
    maintenance
    Enables searching ArXiv, fetching and indexing papers, and querying a personal paper library using vectorless RAG with BM25 and contextual compression, all without GPU or embedding models.
    1
    MIT