"Connect to MySQL server, edit database structure, and run manual migrations" matching MCP servers:

Fireproof ledger database with multi-user sync

An MCP server that provides deterministic math computation (numeric, symbolic, unit, matrix) and hybrid retrieval over study notes/textbooks with citations, helping Claude become a reliable study partner.

Turns GitHub repository history into a cited maintainer skill for coding agents, providing tools to collect evidence, query the knowledge graph, and inspect bundles.

Turn Obsidian notes into agent-ready context, preview-only plans, and safe repo handoffs.

A MCP server connecting to a managed index on LlamaCloud. This is a TypeScript-based MCP server that implements a connection to a managed index on LlamaCloud.

MCP server for Google NotebookLM enabling notebook, source, and audio overview management with hybrid metadata storage.

Enterprise MCP server that exposes multiple MySQL databases to AI services through one endpoint, with API-key auth, per-key database scoping, a layered SQL guard, and a markdown schema-knowledge graph.

Enables local MCP clients to list, read, write, and search notes in an Obsidian vault via an HTTP server running inside Obsidian.

A lightweight MCP server for semantic search over markdown knowledge bases, enabling AI coding agents to index, search, and answer questions from local markdown documents.

Agent-first knowledge graph MCP server that provides 25 tools for managing a knowledge graph with nodes and edges, plus a human-readable dashboard for LLMs and AI agents.

Self-documenting MCP server enabling AI agents to autonomously create, manage, and query SQLite databases with enforced metadata requirements for discoverability.

A static, read-only MCP server that exposes a database knowledge base (schema, relationships, workflows, and reasoning patterns) so Claude Code / Copilot can reason about a database without a live connection.

Enables AI agents to store and retrieve project context, bugs, decisions, and session logs by reading and appending markdown files in a local Obsidian vault, without requiring any cloud services.

A comprehensive Model Context Protocol (MCP) server that provides access to the AlphaFold Protein Structure Database through a rich set of tools and resources for protein structure prediction analysis.

Tracks working context and code structure in a portable local SQLite database, enabling seamless context and task continuity across different AI coding tools.

This server enables interaction between Neo4j databases and Claude Desktop, allowing users to execute Cypher queries, create nodes, and establish relationships in the database.

A Model Context Protocol server implementation that enables LLMs to interact with NebulaGraph database for graph exploration, supporting schema understanding, queries, and graph algorithms.

Provides a document database with search, retrieval, and creation tools, and a task tracker with search and status filtering, enabling AI agents to manage documents and tasks via natural language.

Enables persistent memory for AI systems by providing tools for episodic, semantic, and procedural data storage through a vector-and-graph-enhanced database. It allows models to maintain long-term continuity using similarity search, thematic clustering, and identity tracking.

Enables AI assistants to create, read, update, and manage SiYuan notes, supporting notebook management, document operations, block editing, database attribute views, search, file operations, and export.