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Zotero MCP

面向 Windows 与 WSL 的本地 Zotero MCP。读取走 Zotero Local API;需要修改 Zotero 时,先生成计划,再通过 Zotero Web API 执行并回读核验。

交给 Codex 配置

clone 仓库后,在仓库目录对 Codex 发送:

读取 AGENTS.md,按首次配置流程检查我的 Codex 与 Zotero 分别运行在 Windows 还是 WSL。账号注册、浏览器设置和密钥输入由我完成;你负责其余检测、配置与验证。

Codex 会先做只读检查。缺少 Zotero Web API、MinerU 或 SciVerse 账号时,会给出官方入口并暂停;不会索要或显示密钥。完整配置还会检查可选的 paper-lookup skill,并在安装前等待批准。

Related MCP server: zotero-mcp

安装

需要 Python 3.11 或更新版本。

git clone <repository-url> zotero-mcp
cd zotero-mcp
python -m venv .venv

Windows PowerShell 安装:

.\.venv\Scripts\Activate.ps1
python -m pip install .

WSL/Linux 安装:

source .venv/bin/activate
python -m pip install .

运行首次检查:

zotero-mcp setup plan --profile core

core 只要求 Zotero 读取链路。需要 Web API 写入、MinerU、QMD 与 SciVerse 时使用:

zotero-mcp setup plan --profile full

完整步骤见 docs/SETUP.md,账号边界见 docs/ACCOUNTS.md

功能

  • 检索、读取、匹配 Zotero 条目

  • 按 key、唯一名称或完整路径解析 collection

  • 读取批注、笔记、PDF 全文、页面与 Better BibTeX citation key

  • 通过 plan/apply 两阶段工具导入论文、调整 collection、删除 PDF 附件

  • 为缺少英文正文的条目发现并受控导入公开正式出版版 PDF;拒绝作者手稿、接受稿和预校样

  • 可选使用 MinerU 批量解析 PDF,并用 QMD 建立全文检索

  • 用本地 SQLite 记录重点 collection 的翻译、MinerU、QMD 和运行健康状态,供不同对话共享

  • 在用户现有 collection 标准下,用 QMD 全文证据协同规划和执行文献整理

  • 调用官方 PDF2zh Server 批量翻译全文,按用户配置自动命名、下载并导入译文附件;默认标题为 CN,文件名为“英文原文件名的全文翻译.pdf”

  • 按 toolset 控制暴露给 Agent 的工具

所有 apply 工具要求精确 key 和明确的 confirm=true。Web API 写入前会重新读取云端状态,写后回读核验。

Toolsets

  • literature:检索、条目读取、collection 与论文导入

  • review:批注、笔记、全文、MinerU 与页面工具

  • maintenance:collection 调整与 PDF 附件删除

  • all:全部公共工具

默认只启用 literature。生成 Codex 配置:

zotero-mcp setup print-codex-config --toolsets literature,review,maintenance

命令只输出配置块,不修改 Codex 配置文件,不包含密钥。

可用 MCP 工具:

  • zotero_ping

  • zotero_search

  • zotero_match

  • zotero_item

  • zotero_children

  • zotero_get_annotations

  • zotero_get_notes

  • zotero_get_citation_key

  • zotero_collections

  • zotero_resolve_collection

  • zotero_item_collections

  • zotero_collection_items

  • zotero_web_api_status

  • zotero_plan_paper_import

  • zotero_apply_paper_import

  • zotero_plan_pdf_acquisition

  • zotero_apply_pdf_acquisition

  • zotero_plan_collection_reconcile

  • zotero_apply_collection_reconcile

  • zotero_plan_pdf_attachment_delete

  • zotero_apply_pdf_attachment_delete

  • zotero_plan_manual_translation_rename

  • zotero_apply_manual_translation_rename

  • zotero_extract_text

  • zotero_mineru_submit

  • zotero_mineru_result

  • zotero_render_pages

  • zotero_find_figure_pages

可选集成

  • Zotero Web API:只在写入时需要。

  • MinerU:外部 PDF 解析服务,需要账号与 Token,存在调用额度限制。

  • QMD:本地检索工具,无账号要求。

  • SciVerse:外部文献检索服务和独立 MCP,需要账号与 Token,存在调用额度限制。

  • paper-lookup:可选 Codex skill,使用多种开放学术 API;推荐与 SciVerse 互补使用。

  • WebDAV:仅用于 Zotero 附件同步,不是 MCP 依赖。

  • PDF2zh:独立第三方全文翻译工具;本项目提供无人值守队列和 Zotero 回写。

完整文献工作流保持四段独立边界:SciVerse 与 paper-lookup 互补检索候选,Zotero 查重并经 plan/apply 导入,MinerU 解析已确认的 PDF,QMD 更新索引并回读核验。任何外部上传或 Zotero 写入都需要单独批准。

Zotero 工作流状态库

SQLite 是跨对话共享的工作流状态库,不是 Zotero 数据库,也不替代翻译队列或 QMD。它同时保存当前状态快照、MinerU 解析来源和可恢复批次回执。跟踪范围由用户初始化时指定,可同时跟踪多个递归 collection;每次 next-batch 或实际处理仍只针对一个明确 collection。

唯一运行状态文件:~/.local/state/zotero-mcp/zotero_workflow.sqlite3。CSV 不是运行状态;只有显式执行 export-csv 时才生成平面视图。

首次初始化时显式指定全部需要跟踪的 collection:

python -m zotero_mcp.zotero_workflow sync \
  --collection Senescence \
  --collection "Journal Club" \
  --collection Glioma

之后状态变化后可无参数复用已保存的跟踪范围:

python -m zotero_mcp.zotero_workflow sync

只处理一个 collection:

python -m zotero_mcp.zotero_workflow next-batch --collection Senescence --limit 5

查询汇总或单条论文:

python -m zotero_mcp.zotero_workflow status
python -m zotero_mcp.zotero_workflow status --item ITEMKEY
python -m zotero_mcp.zotero_workflow export-csv

同步只写入上述本地 SQLite,不修改 Zotero、PDF、MinerU、QMD 或 PDF2zh,不提交翻译任务。export-csv 是显式的只读导出,不参与状态恢复。role=source_pdftranslated_pdfsupplementary_pdf 是工作流判断;is_primary 只表示 Zotero 的主附件提示,不能单独用来判断英文正文。

正式出版版 PDF 获取

先同步统一状态库,再只读扫描缺少英文正文的条目:

zotero-workflow sync
zotero-pdf scan --collection Senescence --recursive --missing-only
zotero-pdf status --item ITEMKEY

扫描会查询 Crossref、OpenAlex、PMC、可选 Unpaywall 和出版社文章页,将候选及拒绝原因写入统一 SQLite;不会下载 PDF 或修改 Zotero。只自动接受能够证明为公开 Version of Record 的期刊 PDF,正式期刊条目的作者手稿、接受稿、投稿稿、预校样和旧预印本全部失败关闭。

Unpaywall 需要联系邮箱时,在用户配置中设置:

[pdf_acquisition]
unpaywall_email = "name@example.org"

实际下载和附件导入要求精确条目 key 和明确确认。先预演:

zotero-pdf apply --item ITEMKEY --dry-run

确认后执行:

zotero-pdf apply --item ITEMKEY --confirm

MCP 对应入口是 zotero_apply_pdf_acquisition,同样要求精确 key 和 confirm=true。执行时重新核验来源,读取一次 Zotero 当前 attachmentRenameTemplate,附件标题固定为 PDF,文件名按模板生成。不会覆盖已有英文 PDF,也不会自动触发 MinerU、QMD 或 PDF2zh。

协同整理 collection

QMD 建立全文索引后,Codex 可以读取用户现有分类规则,逐篇回读全文,生成 collection 调整计划。用户审阅后,工具再通过 plan/apply 两阶段执行并回读。

同一连续审核对话内,已完成且仍有效的父条目、英文 PDF、MinerU 和 QMD 预检可以复用;不因用户批准或批次衔接再次逐篇实时复核。只有发现外部状态变化、附件更换、预检失效、计划与当前状态不一致或用户明确要求时,才重新扫描。plan/apply 自身的云端冲突检查和写后回读仍必须执行。

通用流程见 docs/COLLECTION_REVIEW.md,基础记录模板见 templates/collection_review.md

PDF 全文翻译

用户先从官方项目安装并在 Zotero 图形界面配置 Zotero PDF2zh。本项目直接读取该图形界面保存的激活服务、模型和 Server 地址;API key 不进入命令行、队列、日志或仓库。

提交或检查翻译前先刷新状态库,确认目标条目没有活动任务或已有译文:

python -m zotero_mcp.zotero_workflow sync
python -m zotero_mcp.zotero_workflow status --item ITEMKEY
zotero-mcp setup save-secret webdav
zotero-translate doctor
zotero-translate enqueue --collection "Collection > Path" --recursive
zotero-translate run --qps 10 --pool-size 20 --max-items 3 --dry-run
zotero-translate schedule --at "2026-08-15 22:00" --qps 10 --pool-size 20 --max-items 3

QPS、poolSize、最多处理篇数和运行时间每批显式提供。正式运行去掉 --dry-run。完整配置、队列和失败恢复见 docs/TRANSLATION.md

译文命名在用户配置中统一设置;未配置时保持当前默认行为:

[translation]
attachment_title = "CN"
filename_template = "{source_stem}的全文翻译.pdf"

filename_template 必须包含且只支持 {source_stem} 变量,并渲染为单个 .pdf 文件名。用户仍可在 Zotero 中手动提交单篇翻译。默认可通过 maintenance toolset 的 plan/apply 工具事后重命名;也可显式开启 translation.auto_rename_manual,由后台监视器按上述配置自动重命名新译文。首次启动只记录历史基线,不批量修改旧译文。旧标题 CN 继续被识别,避免改配置后重复导入。两种模式都不修改 PDF2zh 插件源码或 PDF 内容。

远程 WebDAV 和 PDF2zh Server 默认必须使用 HTTPS;同机 PDF2zh Server 仍可使用 localhost HTTP。doctor 只做无写入检查,正式批处理会先创建并删除一个临时 WebDAV 探针。

配置位置

  • Windows:%APPDATA%\zotero-mcp\config.toml

  • WSL/Linux:~/.config/zotero-mcp/config.toml

可用 ZOTERO_MCP_CONFIG 指定配置文件,或用 ZOTERO_MCP_CONFIG_DIR 指定配置目录。环境变量与完整配置项见 docs/SETUP.md

Zotero Web API key 默认保存在 Zotero MCP 配置目录下的 zotero_web_api_key.secret;MinerU Token 独立保存在 ~/.config/mineru/mineru_api_token.secret。它们是仅含单行密钥的 UTF-8 纯文本文件,不是加密格式;WSL/Linux 下默认权限为 0600。使用 zotero-mcp setup save-secret zoterozotero-mcp setup save-secret mineru 通过隐藏输入保存,不要把密钥写入仓库或提交到 Git。

MinerU 批处理

Zotero 批处理沿用官方 mineru-open-sdk 的 API 契约和错误映射,并通过统一的 NORMAL HTTP 路由访问 MinerU,同时保留可恢复上传、Zotero item-key 目录、产物验证和 QMD 流水线。通用文件解析应另行安装官方 mineru-open-mcp,作为独立 MCP 使用;它与下列 Zotero 专用命令互不替代。若不希望 MCP 启动时创建空的默认输出目录,可用 scripts/run_mineru_open_mcp_lazy.py 启动官方 MCP;它不修改官方安装包,显式传入 output_dir 的行为保持不变。

单批预检与提交:

zotero-mineru plan <collection-key> --recursive
zotero-mineru submit-batch <collection-key> --recursive --max-pages 1000 --max-files 20
zotero-mineru collect <batch-id>
zotero-mineru verify <batch-id>

MinerU 与 QMD 的有界流水线:

zotero-mineru-qmd <collection-key> --recursive --page-budget 1000 --max-files 20

MinerU 论文状态和批次回执保存在 ~/.local/state/zotero-mcp/zotero_workflow.sqlite3。不使用或生成 mineru_todo.csv.jobs 或其他批次状态文件。替换旧解析结果时,下载内容临时放在 MinerU 输出目录的 .staging 中。

如果发现已有完整解析目录但 SQLite 没有记录,预检会将其标为 untracked_existing 并阻止重新上传。先核对当前英文附件,再显式认领:

zotero-mineru adopt-existing ITEMKEY --attachment-key ATTACHMENTKEY
zotero-mineru adopt-existing ITEMKEY --attachment-key ATTACHMENTKEY --confirm

认领只写入 SQLite,随后仍需正常 QMD 更新、嵌入和核验。

测试

python -m unittest discover -s tests -v

公开 Python 包位于 src/zotero_mcp,测试位于 tests;仓库根目录只保留项目元数据、文档和一级目录。

常见故障见 docs/TROUBLESHOOTING.md

Available Tools

13 tools
zotero_apply_paper_importA
Idempotent

Apply a preflighted batch of up to 50 papers through the official Zotero Web API. Rescans the local library, performs fail-closed cloud exact-ID checks before creation, resolves DOI/PMID/arXiv metadata, and versions collection unions for existing items. Never removes memberships, merges items, edits existing metadata, or creates/downloads/uploads PDF attachments. Zotero desktop sync makes cloud writes visible locally. Requires confirm=true.

ParametersJSON Schema
NameRequiredDescriptionDefault
itemsYes
confirmYesMust be true to authorize Zotero writes.

Output Schema

ParametersJSON Schema
NameRequiredDescription
okYes
dataNo
textNo
errorNo

TDQS

A4.6/5.0
Behavior5/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

The description goes well beyond the annotations by detailing fail-closed checks, metadata resolution, collection union versioning, non-destructive guarantees ('Never removes memberships, merges items...'), and the desktop sync implication. This rich behavioral disclosure matches the annotations and adds critical safety context.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Three sentences, each earning its place: action+scope, process details, and safety/prerequisite notes. Front-loaded with the main verb, the description is dense but not bloated, avoiding any filler.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

The tool is moderately complex (batch write, checks, unions), and the description covers the process, exclusions, prerequisites, and desktop sync behavior. It does not mention error handling or rate limits, but an output schema exists, which covers return values, so the missing bits are not critical.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

With schema coverage at 50%, the description compensates by explaining that 'items' is the preflighted batch (up to 50 papers) and that 'confirm=true' authorizes writes. It also adds meaning to collection_keys/ID fields via 'resolves DOI/PMID/arXiv metadata' and 'versions collection unions,' but it does not explicitly map each field beyond the schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description opens with a clear verb and resource: 'Apply a preflighted batch of up to 50 papers through the official Zotero Web API.' It explicitly distinguishes itself from the planning sibling tool by saying 'preflighted,' and lists concrete sub-actions (rescans, cloud checks, metadata resolution, collection unions) that fully define the tool's purpose.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The phrase 'Apply a preflighted batch' clearly indicates this tool is for executing a prior planning step, and 'Requires confirm=true' states a precondition. It gives clear context for use but does not explicitly name the alternative (e.g., 'use zotero_plan_paper_import for preflight'), so it stops short of a full 5.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

zotero_childrenA
Read-onlyIdempotent

List child attachments/notes for one Zotero parent item key.

ParametersJSON Schema
NameRequiredDescriptionDefault
keyYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
okYes
dataNo
textNo
errorNo

TDQS

A4.1/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already declare readOnlyHint=true, idempotentHint=true, and destructiveHint=false, covering the safety profile. The description adds the scope of the listing (child attachments/notes) but does not disclose behavior such as pagination, whether only immediate children are returned, or what happens for items without children. It provides some contextual value but not rich behavioral detail.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a single, front-loaded sentence that uses the active verb 'List' and precisely communicates the tool's purpose with zero wasted words. It is appropriately concise and well-structured.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's simplicity (one parameter, read-only, idempotent) and the presence of an output schema, the description provides sufficient information for an agent to invoke it correctly. It states the input (parent item key) and the output (child attachments/notes), and annotations cover the safety profile. The description is complete for a simple list operation.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The schema defines `key` only as a string with no description (0% schema coverage). The description compensates by explaining that the key is a Zotero parent item key, giving semantic meaning to the parameter. It does not specify the exact key format, but for a single parameter this is sufficient to understand what to provide.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description uses a specific verb 'List' and clearly identifies the resource: 'child attachments/notes for one Zotero parent item key.' This distinguishes it from sibling tools like zotero_item (which retrieves a single item) and zotero_collection_items (which lists items in a collection). The purpose is unambiguous.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description does not explicitly mention when to use this tool versus alternatives, but the phrase 'for one Zotero parent item key' implies a prerequisite (you need a valid parent item key). No alternatives or exclusions are stated, so usage guidance is only implied rather than explicit.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

zotero_collection_itemsA
Read-onlyIdempotent

List items assigned to an exact Zotero collection key or collection reference, optionally including nested subcollections with duplicate items removed.

ParametersJSON Schema
NameRequiredDescriptionDefault
keyNoCollection key from zotero_collections.
limitNo
recursiveNo
collectionNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
okYes
dataNo
textNo
errorNo

TDQS

A4.3/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already cover the safety profile (readOnly, idempotent, non-destructive). The description adds behavioral detail beyond these: collection can be specified by key or reference, recursive mode includes nested subcollections, and duplicate items are removed. This goes beyond the annotations and gives the agent a precise expectation of output shaping.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The entire description is a single concise sentence. It front-loads the action ('List items') and packs the critical optional behavior (recursive with dedup) without any filler. Every word adds value.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

An output schema exists, so return values are covered. The description provides the essential purpose, accepted identifiers, and the dedup/recursive behavior. The 'limit' parameter is a minor detail already constrained by schema (default 100, max 1000). For a read-only listing tool, this is complete.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is only 25% (only key, name, path in the collection object are described; limit and recursive are not). The description partially compensates by explaining that 'collection' accepts a key/reference and hinting at the recursive option, but it does not explain the 'limit' parameter's behavior. It leaves a gap for a low-coverage schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool lists items in a Zotero collection, using specific identifiers (key or reference). It distinguishes itself from sibling tools like zotero_collections (which lists collections) and zotero_item_collections (which maps items to collections). The optional recursive behavior and dedup are also mentioned, making the purpose unambiguous.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies when to use the tool: whenever you need items for a known collection key/reference, with optional recursive traversal. It does not explicitly describe when not to use it or name alternatives, but the clear context of 'exact collection' and the sibling tool names provide sufficient guidance.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

zotero_collectionsA
Read-onlyIdempotent

List Zotero collections with full nested paths, keys, and direct item/subcollection counts.

ParametersJSON Schema
NameRequiredDescriptionDefault

No parameters

Output Schema

ParametersJSON Schema
NameRequiredDescription
okYes
dataNo
textNo
errorNo

TDQS

A4.5/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already declare readOnlyHint, idempotentHint, and destructiveHint=false. The description adds value by disclosing that results include nested paths, keys, and counts, which is useful behavioral context beyond the annotations.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

A single sentence front-loaded with the verb 'List' and packed with concrete deliverables. No wasted words; every element contributes to understanding what the tool returns.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

The tool is simple with no parameters and an output schema available. The description fully conveys the purpose and output content, and annotations cover the safety profile, making the definition complete for an agent to select and invoke correctly.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The tool has zero parameters, so the schema provides no parameter semantics. Per the rubric, 0 params earn a baseline score of 4. The description does not need to explain parameters because there are none.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description clearly specifies the action (List) and resource (Zotero collections), and enumerates specific outputs (full nested paths, keys, direct item/subcollection counts). This distinguishes it from sibling tools that resolve a single collection or list items in a collection.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description conveys a clear use case: listing collections with hierarchical details. It implies this is the tool for getting an overview of all collections, but does not explicitly compare with alternatives or state exclusions, so it stops short of a 5.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

zotero_get_citation_keyA
Read-onlyIdempotent

Resolve the Better BibTeX citation key for one exact Zotero item key. Uses the running Better BibTeX plugin first, then its stored Zotero citationKey/Extra field when available.

ParametersJSON Schema
NameRequiredDescriptionDefault
keyYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
okYes
dataNo
textNo
errorNo

TDQS

A4.4/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already declare readOnlyHint, openWorldHint, idempotentHint, and destructiveHint=false. The description adds valuable behavioral context: it uses the running Better BibTeX plugin first, then falls back to the stored citationKey/Extra field. This discloses the resolution order and dependency on the plugin, which goes beyond the structured annotations.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is two sentences, front-loaded with the primary purpose, and includes the method without any fluff. Every sentence contributes, and it is appropriately sized for a simple single-parameter tool.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's simplicity (one parameter), the presence of an output schema, and annotations covering safety semantics, the description is nearly complete. It covers the purpose and fallback behavior. It could mention what happens when no citation key is found, but the lack of that detail is not a major gap because output schema likely covers return structure.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The input schema has 0% coverage (the 'key' parameter has no description). The description compensates by clarifying that the parameter is 'one exact Zotero item key', providing meaning that the schema lacks. It does not specify format details, but enough meaning is added to make the parameter understandable.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description states a specific verb ('Resolve') and resource ('Better BibTeX citation key for one exact Zotero item key'). It clearly distinguishes from siblings like zotero_search or zotero_item by focusing on resolving a citation key from a single exact item key, and even hints at the underlying method.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies usage for a single exact Zotero item key, giving clear context. It does not explicitly name alternatives or exclusions, but the scope is well-defined, and a user would understand when to invoke this tool vs. a broader search tool. No explicit 'use this instead of X' guidance, but not misleading.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

zotero_itemA
Read-onlyIdempotent

Show one Zotero item as readable metadata, complete JSON, or a Better BibTeX export. Markdown remains the default and includes local PDF paths.

ParametersJSON Schema
NameRequiredDescriptionDefault
keyYes
formatNomarkdown

Output Schema

ParametersJSON Schema
NameRequiredDescription
okYes
dataNo
textNo
errorNo

TDQS

A4.3/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already declare readOnlyHint=true, destructiveHint=false, idempotentHint=true, and openWorldHint=true, so the safety profile is covered. The description adds useful behavioral context beyond annotations: that Markdown is the default format and includes local PDF paths, and that JSON output is 'complete.' This gives the agent a better sense of what each output format looks like and the default behavior.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is two sentences long and packs essential information: the core action, the three output formats, the default, and a key detail about the default (PDF paths). There is no redundancy or filler. Every sentence earns its place, making it highly concise and well-structured.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's simplicity (one item, one optional format parameter), the description covers the core functionality, default behavior, and output format options. It is a read-only operation with strong annotations and an output schema, so the description need not elaborate return values or error handling. The description is complete for the tool's scope.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, so the description must compensate. It explains the 'format' parameter by listing the three possible values (markdown, json, bibtex) and identifies markdown as the default. However, it does not explain the 'key' parameter beyond implying it identifies a single Zotero item. The description adds some meaning for the format field but leaves the key field underspecified, so a 3 is suitable.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool's purpose: 'Show one Zotero item as readable metadata, complete JSON, or a Better BibTeX export.' The verb 'show' plus the resource 'one Zotero item' is specific and distinguishes it from sibling tools like zotero_search (which searches) or zotero_children (which gets child items). The mention of specific output formats further clarifies its role.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description provides clear context: use this tool when you need to display a single Zotero item in a chosen format. The word 'one' implicitly excludes cases requiring multiple items, but it does not explicitly name alternatives or state when not to use it. This qualifies as clear context without exclusions, so a 4 is appropriate.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

zotero_item_collectionsA
Read-onlyIdempotent

Show every Zotero collection containing an item. Child attachment/note keys are resolved to their top-level parent item.

ParametersJSON Schema
NameRequiredDescriptionDefault
keyYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
okYes
dataNo
textNo
errorNo

TDQS

A4.2/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already establish the read-only, open-world, idempotent, and non-destructive nature. The description adds valuable behavior beyond that: child attachment/note keys are resolved to their top-level parent item. This is a concrete behavioral detail that affects output and is not covered by the annotations.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is two sentences, front-loaded with the primary purpose and followed by a critical edge-case behavior. Every word earns its place with no redundancy or fluff.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a simple read-only lookup with one parameter and an output schema, the description covers the essential purpose and the key child-resolution case. It omits explicit return structure, but the output schema covers that. The description is sufficiently complete for an agent to invoke the tool correctly.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The schema provides only a 'key' string with no description. The description indirectly clarifies that 'key' identifies an item and mentions how child keys are handled, adding meaningful context. However, it does not explicitly state that the key is the item whose collections are returned, nor does it describe the key format. The description compensates partially but not fully for the 0% schema coverage.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool's function: 'Show every Zotero collection containing an item.' This is a specific verb-resource pairing and distinct from sibling tools like zotero_collections (listing collections) or zotero_collection_items (listing items in a collection). The added note about resolving child attachment/note keys to parent items further refines the scope.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implicitly conveys when to use the tool: when you have an item key and need to know which collections contain it. It provides clear context but does not explicitly name alternatives or exclusion cases. Since the tool's purpose itself defines its usage, it earns a 4 rather than 5.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

zotero_matchA
Read-onlyIdempotent

Find the best Zotero item by exact or near-exact title/DOI.

ParametersJSON Schema
NameRequiredDescriptionDefault
bestNo
fieldNotitle
limitNo
queryYesExact or near-exact title/DOI.
thresholdNo
scan_limitNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
okYes
dataNo
textNo
errorNo

TDQS

A3.7/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already declare the operation read-only, idempotent, and non-destructive. The description adds meaningful behavioral context beyond the annotations by indicating that the tool performs fuzzy/near-exact matching and returns the 'best' match, which is not captured in structured metadata.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a single, front-loaded sentence with no redundant information. It states the core purpose in direct language without repeating schema or annotation details.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness2/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

With 6 parameters and a complex matching behavior, the one-sentence description is insufficient. It omits explanations of matching thresholds, candidate scanning limits, and the meaning of 'best'. The output schema helps with return values, but the description still fails to cover essential operational details.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters2/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is only 17%, with only the 'query' parameter described. The tool description mentions 'title/DOI' which relates to the 'field' parameter, but fails to explain the roles of 'best', 'limit', 'threshold', and 'scan_limit'. The description does not compensate for the low schema coverage.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description uses a specific verb ('Find'), names the resource ('Zotero item'), and specifies the matching basis ('exact or near-exact title/DOI'). This clearly distinguishes it from the sibling zotero_search, which likely performs broader searches.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies the tool is for matching known titles or DOIs, but it does not explicitly state when to prefer this over zotero_search or mention alternatives. Usage context is present but not elaborated.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

zotero_pingA
Read-onlyIdempotent

Test access to the configured Zotero Local API from the current environment.

ParametersJSON Schema
NameRequiredDescriptionDefault

No parameters

Output Schema

ParametersJSON Schema
NameRequiredDescription
okYes
dataNo
textNo
errorNo

TDQS

A4.3/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

The annotations already declare readOnly, idempotent, and non-destructive behavior, so the bar is lower. The description adds value by specifying that the test targets the 'configured Zotero Local API' and is from the 'current environment', which gives context about connectivity. No contradictions with annotations. It does not detail timeout or error behavior, but for a simple ping with an output schema, this is adequate.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a single, direct sentence that immediately conveys the tool's purpose. There is no redundancy or irrelevant information. Every word contributes to understanding the tool's function.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's simplicity (no parameters, output schema present, rich annotations), the description is complete. It explains what the tool does and from where, which is sufficient for a ping/health-check tool. The output schema covers return details, so no additional description is needed.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The tool has zero parameters, and the schema coverage is 100% (empty schema). The description adds no parameter details because there are none to explain. According to the rubric, a baseline of 4 applies for 0 params, and this description satisfies that baseline.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool's function: 'Test access to the configured Zotero Local API from the current environment.' It specifies a verb ('test'), a resource ('Zotero Local API'), and scope ('from the current environment'). This distinguishes it from the sibling tools, which perform searches, item retrieval, or collection operations rather than connectivity checks.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The usage is implied by the name and description: it is a ping/health check for the Zotero Local API. However, the description does not explicitly say when to use it (e.g., before calling other Zotero tools) nor does it mention alternatives or exclusions. Thus, the guidance is only implicit.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

zotero_plan_paper_importA
Read-onlyIdempotent

Read-only preflight for up to 50 papers. Exact DOI, PMID, PMCID, and arXiv IDs may match existing items. A title-only match is always ambiguous. Reports create, collection-union, unchanged, manual, invalid, or ambiguous actions. Never touches PDFs.

ParametersJSON Schema
NameRequiredDescriptionDefault
itemsYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
okYes
dataNo
textNo
errorNo

TDQS

A4.7/5.0
Behavior5/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

The description goes well beyond annotations by disclosing that exact identifiers may match existing items, title-only matches are always ambiguous, and the tool reports specific action categories. It also explicitly states it never touches PDFs, adding meaningful non-obvious behavioral context.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is compact and front-loaded with the core purpose. Each of its four sentences adds distinct value: scope, matching semantics, report output, and safety guarantee. No wasted words.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Despite the rich schema and annotations, the description fully captures the tool's key constraints and behavior: read-only, up to 50 papers, matching nuances, action categories, and non-interference with PDFs. Since an output schema exists, return-value details are not needed here.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

With schema description coverage at 0%, the description compensates by explaining how item identifiers (DOI, PMID, PMCID, arXiv) affect matching, the ambiguity of title-only matches, and the 50-paper limit. It does not enumerate every item field, but the schema's own property descriptions provide structural details.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description clearly states specific verb 'preflight' and resource 'papers' with a scope of up to 50 items. It distinguishes from siblings by emphasizing read-only behavior and listing concrete report actions, which contrasts with zotero_apply_paper_import.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description establishes clear context: it is a read-only preflight that reports actions and never touches PDFs, implying use before zotero_apply_paper_import. However, it stops short of explicitly stating when to use it versus alternatives, so it does not fully meet the 'explicit when/when-not' bar.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

zotero_resolve_collectionA
Read-onlyIdempotent

Resolve one exact Zotero collection key, globally unique name, or full path. Fails closed on missing, duplicate, deleted, or malformed collections. Similar candidates are suggestions only and are never selected automatically.

ParametersJSON Schema
NameRequiredDescriptionDefault
keyNoExact Zotero collection key.
nameNoExact globally unique Zotero collection name.
pathNoExact full path such as Projects > Glioma.

Output Schema

ParametersJSON Schema
NameRequiredDescription
okYes
dataNo
textNo
errorNo

TDQS

A4.5/5.0
Behavior5/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Beyond the annotations (read-only, idempotent, non-destructive), the description discloses critical fail-closed behavior for missing, duplicate, deleted, or malformed collections, and explicitly states that similar candidates are never selected automatically.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Two concise, front-loaded sentences. The first states the action and inputs; the second covers failure behavior and ambiguity policy. No filler or redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given rich schema (oneOf, per-parameter descriptions) and strong annotations, the description sufficiently covers the tool's exact-match resolution, failure modes, and ambiguity handling. The output schema handles return value documentation, so no gaps are apparent.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The input schema already provides full descriptions for key, name, and path, with 100% coverage. The description only restates these parameter types without adding new semantic detail, so it does not improve upon the schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool resolves an exact Zotero collection using a key, globally unique name, or full path. It distinguishes itself from fuzzy matching by emphasizing exactness and noting similar candidates are never auto-selected.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies when to use: when an exact identifier is available, and warns that duplicate or ambiguous inputs fail closed. It clearly separates this from suggestion-based matching, though it does not explicitly name an alternative sibling tool.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

zotero_web_api_statusA
Read-onlyIdempotent

Read-only check for official Zotero Web API credentials, expected user ID, personal-library write permission, and file-write permission. Performs no write.

ParametersJSON Schema
NameRequiredDescriptionDefault

No parameters

Output Schema

ParametersJSON Schema
NameRequiredDescription
okYes
dataNo
textNo
errorNo

TDQS

A4.5/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already declare readOnlyHint=true, idempotentHint=true, and destructiveHint=false. The description reinforces these by stating 'Read-only check' and 'Performs no write,' and adds valuable context by enumerating exactly what is checked (credentials, user ID, write permission, file-write permission). This goes beyond the annotations without contradicting them.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a single sentence that front-loads the core purpose ('Read-only check') and includes only essential details about what is verified and that no write occurs. Every phrase earns its place.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a parameterless read-only status tool with an output schema and strong annotations, the description fully covers purpose, safety, and scope of the check. Nothing is missing for an agent to confidently invoke it.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

With zero parameters, the schema is trivially fully covered. The baseline for no params is 4. The description does not need to explain parameter meanings, and it appropriately focuses on the tool's purpose and behavior.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description uses a specific verb ('check') and identifies the exact resources being verified (official Zotero Web API credentials, expected user ID, personal-library write permission, file-write permission). This clearly distinguishes it from sibling tools like zotero_ping, which likely tests connectivity rather than credential/permission status.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description clearly implies the tool is for verifying credentials and permissions before performing write operations, by explicitly stating 'Read-only check' and 'Performs no write.' While it does not name alternatives or exclusion criteria, the context is clear enough for an agent to select it when a pre-flight credential check is needed.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

Tool Schema Changelog

Recent tool additions, removals, and schema changes observed during successful MCP inspections.

  1. 13 tool updatesv0.7.0
    • First observedzotero_apply_paper_import
    • First observedzotero_children
    • First observedzotero_collection_items
    • First observedzotero_collections
    • First observedzotero_get_citation_key
    • First observedzotero_item
    • First observedzotero_item_collections
    • First observedzotero_match
    • First observedzotero_ping
    • First observedzotero_plan_paper_import
    • First observedzotero_resolve_collection
    • First observedzotero_search
    • First observedzotero_web_api_status

TDQS

A4.1/5.0

Scored across 13 tools

Disambiguation5/5

Each tool targets a distinct resource and action: search, match, item detail, children, citation keys, collections (list/resolve), item-collection relationships, web API status, and import plan/apply. Even related tools like plan and apply are clearly separated by preflight vs. execution.

Naming Consistency3/5

All tools share a consistent 'zotero_' prefix, but the naming convention mixes verbs (ping, search, match, get_citation_key, resolve_collection, plan/apply_paper_import) and nouns (item, children, collections, item_collections, collection_items, web_api_status). This is readable but not a uniform verb_noun pattern.

Tool Count5/5

13 tools is well within the ideal 3-15 range for a purpose-specific server. Each tool contributes meaningfully to the Zotero workflow without redundancy or bloat.

Completeness4/5

The tool set covers search, retrieval, collection management, item relationships, citation keys, and a robust import workflow (plan + apply). It avoids direct item create/update/delete and attachment upload, which are meaningful gaps if full Zotero management were expected, but the scope appears intentionally read-and-import oriented.

Maintenance

ActivityMaintained
ResponsivenessNo issues

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