Obsidian MCP Learning System
Analyzes and synthesizes content from Markdown notes to identify learning concepts, group topics, and compare documentation with implementation details.
Integrates with Obsidian vaults to provide a structured learning interface, enabling automated concept extraction, learning gap analysis, and the generation of study sessions based on note content.
Click on "Install Server".
Wait a few minutes for the server to deploy. Once ready, it will show a "Started" state.
In the chat, type
@followed by the MCP server name and your instructions, e.g., "@Obsidian MCP Learning Systemanalyze my notes to identify learning gaps for my compiler project"
That's it! The server will respond to your query, and you can continue using it as needed.
Here is a step-by-step guide with screenshots.
dhruv's obsidian mcp
i'm working on learning ML compilers + some os concepts this summer so i set up an obsidian vault to track my learning
coincidentally i also wanted some more experience working with mcp so im gonna create an mcp server that connects to codex and gives it some pointers on how to evaluate my learning + make sure my projects are on the right track
stay tuned for updates! we're just getting started ☺︎
Roadmap
This project is a local MCP server for turning an Obsidian vault into a structured compiler-learning interface.
The goal is not just "AI can read my notes."
The goal is to build a real MCP-native learning system with:
tools for computation and analysis
resources for stable context surfaces
prompts for reusable workflows
Current State
Phase 1 — Existing MCP integration
Connect Codex to an existing Obsidian MCP server
Validate basic vault access and note summarization
Phase 2 — Custom local MCP server
Build a custom Python MCP server
Expose initial tools:
extract_conceptsget_learning_gapsgenerate_study_sessioncompare_notes_to_project
Register server in Codex
Verify with MCP Inspector
Get working end-to-end local tool calls
Next Up
Phase 3 — Flesh out the MCP interface
Goal: evolve from "bag of tools" into a real MCP-backed learning interface.
3.1 Resources
Expose stable, inspectable views of the learning system.
Planned resources:
vault://compiler/conceptsvault://compiler/gapsvault://compiler/recent-notesvault://project/alignmentvault://weekly-review/latest
Why:
tools are good for actions
resources are good for persistent context
this makes the server feel more like a system and less like one-off functions
3.2 Prompts
Add reusable workflow templates directly through MCP.
Planned prompts:
weekly_learning_reviewgenerate_study_plannotes_vs_project_analysispaper_to_implementation_breakdown
Why:
removes the need to remember good prompt phrasing
turns repeated workflows into first-class interfaces
3.3 Better analysis heuristics
Upgrade from raw keyword counting to more meaningful note analysis.
Planned improvements:
frontmatter-aware filtering
tag-aware concept grouping
recency-aware analysis
note depth scoring
backlinks / note-link graph analysis
better "shallow vs deep" detection
concept clustering instead of only exact keyword hits
Why:
current heuristics are useful but primitive
this is where the actual intelligence of the server improves
Phase 4 — Multi-source learning system
Goal: compare and synthesize across more than just markdown notes.
Planned sources:
Obsidian vault
local project repo(s)
paper notes / reading notes
PDFs or exported paper summaries
lightweight project tracker / task file
Planned capabilities:
compare notes to implementation
compare paper concepts to project gaps
detect studied-but-not-built topics
generate implementation ideas from recent learning
Why:
this is where MCP starts becoming genuinely high leverage
the server becomes a bridge between learning, planning, and building
Phase 5 — Codex workflow integration
Goal: make the server easy and natural to use inside daily Codex workflows.
Planned work:
improve tool naming and descriptions
make outputs more structured and predictable
add AGENTS.md guidance for when to use each MCP feature
add example prompts for each tool/resource/prompt
reduce need for manual tool invocation phrasing
Why:
a powerful MCP server is useless if the host/client doesn’t use it well
ergonomics matter just as much as capabilities
Future / Stretch Ideas
Sampling
Potential future direction:
let the server request model-generated synthesis through MCP sampling
Possible use cases:
auto-generate weekly reviews
synthesize study guides from grouped notes
produce concept summaries from note clusters
Note:
This is intentionally not a near-term priority.
The server should first have strong tools/resources/prompts before adding more agentic behavior.
Remote / hosted version
Potential future direction:
move from local stdio server to remote server
support HTTP transport
add auth if needed
support broader clients beyond local Codex usage
Note: This is productization, not the immediate learning goal.
Immediate Priorities
Priority 1
Implement resources:
concepts
gaps
recent notes digest
notes/project alignment summary
Priority 2
Implement prompts:
weekly review
study session
notes vs project comparison
Priority 3
Improve heuristics:
frontmatter and tag support
recency filters
better depth scoring
Guiding Principle
This project should move toward:
a real MCP interface for a compiler-learning workflow
and away from:
a pile of loosely related note-analysis functions
If a new feature does not improve one of these, it probably should not be added:
learning feedback loops
study planning
notes-to-project alignment
reusable Codex workflows
structured MCP-native interfaces
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